This repository has been archived by the owner on Dec 22, 2022. It is now read-only.
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
A tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. Are you sure you want to create this branch?
Failed to load latest commit information.
ABOUT This is a wrapper for the Java (OWL-API) implementation of * A parser for OBOF1.4 syntax * An implementation of the OBOF1.4 mapping to OWL (uses the OWLAPI) Originally the project was a stand-alone Java project on googlecode. The main code to load, write and convert OBO to OWL is now part of the OWL-API (version 3.5.x and later). GETTING THE CODE git clone https://github.com/oboformat/oboformat-tools.git BUILDING THE PROJECT mvn clean package This maven command will create/update the required jar files to run the converter.. RUNNING THE CONVERTER ON THE COMMAND LINE: You may find it helpful to add the bin dir to your path: export PATH="$PATH:$HOME/oboformat-tools/bin" Convert a file like this: obolib-obo2owl cell.obo [--to owlxml|manchester] -o FILE-PATH You have to specify the file path as a URL; e.g obolib-obo2owl cell.obo -o file:///Users/me/cell.owl You may find it convenient to do this: obolib-obo2owl cell.obo -o file://`pwd`/cell.owl Alternative syntaxes like this: obolib-obo2owl cell.obo --to manchester -o file://`pwd`/cell.owl Windows users can run the obo2owl as: bin\obolib-obo2owl.bat -o test_resources\caro.owl test_resources\caro.obo ISSUE TRACKER See github issue tracker for the project https://github.com/oboformat/oboformat-tools