monocyte and mononuclear cell Fixes #428

Added axiom to monocyte so inferred to be type of mononuclear cell. Added synonym mononuclear leukocyte to mononuclear cell.
obophenotype · Feb 24, 2016 · 3857675 · 3857675
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commit 3857675
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Showing 3 changed files with 45 additions and 5 deletions.
diff --git a/catalog-v001.xml b/catalog-v001.xml
@@ -0,0 +1,38 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
+    <group id="Folder Repository, directory=, recursive=true, Auto-Update=true, version=2" prefer="public" xml:base="">
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl-bridge-to-uberon.owl" uri="src/ontology/bridge/cl-bridge-to-uberon.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl.owl" uri="cl.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="cl-basic.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/cl-plus-nif.owl" uri="src/ontology/cl-plus-nif.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/imports/clo_import.owl" uri="imports/clo_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/imports/go_import.owl" uri="imports/go_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/imports/imports/chebi_import.owl" uri="imports/chebi_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="duplicate:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="imports/go_seed.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="duplicate:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="imports/uberon_seed.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/imports/imports/pato_import.owl" uri="imports/pato_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/imports/imports/pr_import.owl" uri="imports/pr_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/imports/ncbitaxon_import.owl" uri="imports/ncbitaxon_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/imports/ro_import.owl" uri="imports/ro_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/imports/uberon_import.owl" uri="imports/uberon_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://purl.obolibrary.org/obo/cl/multispecies.owl" uri="src/ontology/multispecies.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="duplicate:http://www.gong.manchester.ac.uk/cto_norm.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/cto_norm.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="duplicate:http://www.gong.manchester.ac.uk/cto_norm.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/cto_norm_changes.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://www.gong.manchester.ac.uk/fma.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/fma.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://www.gong.manchester.ac.uk/go.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/go.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://www.gong.manchester.ac.uk/pato.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/pato.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="http://www.gong.manchester.ac.uk/ro.owl" uri="for_reference/Manchester_CL_normalisation_expt/owl/ro.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl.owl" uri="src/ontology/cl-edit_neg_exp.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/cl-basic.owl" uri="src/ontology/cl-basic.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/clo_import.owl" uri="src/ontology/imports/clo_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/go_import.owl" uri="src/ontology/imports/go_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/chebi_import.owl" uri="src/ontology/imports/chebi_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="src/ontology/imports/go_seed.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/go_import.owl" uri="src/ontology/imports/uberon_seed.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/pato_import.owl" uri="src/ontology/imports/pato_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/imports/pr_import.owl" uri="src/ontology/imports/pr_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/ncbitaxon_import.owl" uri="src/ontology/imports/ncbitaxon_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/ro_import.owl" uri="src/ontology/imports/ro_import.owl"/>
+        <uri id="Automatically generated entry, Timestamp=1444349401386" name="shadowed:http://purl.obolibrary.org/obo/cl/imports/uberon_import.owl" uri="src/ontology/imports/uberon_import.owl"/>
+    </group>
+</catalog>
diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml
@@ -1,5 +1,9 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
+    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/cpox/imports/PR_import.owl." uri="file:/Users/adiehl/Dropbox/Work%20Files/Cell%20Population%20Ontology/CPOX%20imports/PR_import.owl.xml"/>
+    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/cpox/imports/GO_import.owl" uri="file:/Users/adiehl/Dropbox/Work%20Files/Cell%20Population%20Ontology/CPOX%20imports/GO_import.owl.xml"/>
+    <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/cpox/imports/CL_import.owl." uri="file:/Users/adiehl/Dropbox/Work%20Files/Cell%20Population%20Ontology/CPOX%20imports/CL_import.owl.xml"/>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/cpox1.owl" uri="file:/Users/adiehl/Dropbox/Work%20Files/Cell%20Population%20Ontology/CPOX1/CPOX1.owl"/>
     <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/cl.owl" uri="cl-edit.owl"/>
     <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/cl-plus-zfa.owl" uri="cl-plus-zfa.owl"/>
     <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/cl-basic.owl" uri="cl-basic.owl"/>
@@ -14,8 +18,5 @@
     <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/cl/imports/nif_import.owl" uri="imports/nif_import.owl"/>
     <uri id="User Entered Import Resolution" name="http://purl.obolibrary.org/obo/cl/imports/nif_cell.owl" uri="imports/nif_cell.owl"/>
     <uri id="User Entered Import Resolution" name="http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl" uri="mirror/NIF-Cell.owl"/>
-
-
-    <group id="Folder Repository, directory=, recursive=false, Auto-Update=false, version=2" prefer="public" xml:base="">
-    </group>
+    <group id="Folder Repository, directory=, recursive=false, Auto-Update=false, version=2" prefer="public" xml:base=""/>
 </catalog>
diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -7885,7 +7885,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CL_0000576> "cell"^^xsd:string)
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/CL_0000576> "Morphology: Mononuclear cell, diameter, 14 to 20 _M, N/C ratio 2:1-1:1. Nucleus may appear in variety of shapes: round, kidney, lobulated, or convoluted. Fine azurophilic granules present; markers: CD11b (shared with other myeloid cells), human: CD14, mouse: F4/80-mid,GR1-low; location: Blood, but can be recruited into tissues; role or process: immune & tissue remodelling; lineage: hematopoietic, myeloid."^^xsd:string)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0000576> "monocyte"^^xsd:string)
-EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0000576> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0000766> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0030225>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0030316>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0043011>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_part> <http://purl.obolibrary.org/obo/GO_0030141>)))
+EquivalentClasses(<http://purl.obolibrary.org/obo/CL_0000576> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CL_0000766> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000053> <http://purl.obolibrary.org/obo/PATO_0001407>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0030225>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0030316>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002215> <http://purl.obolibrary.org/obo/GO_0043011>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/cl#lacks_part> <http://purl.obolibrary.org/obo/GO_0030141>)))
 SubClassOf(Annotation(<http://www.geneontology.org/formats/oboInOwl#is_inferred> "true"^^xsd:string) <http://purl.obolibrary.org/obo/CL_0000576> <http://purl.obolibrary.org/obo/CL_0000766>)
 SubClassOf(<http://purl.obolibrary.org/obo/CL_0000576> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002202> <http://purl.obolibrary.org/obo/CL_0000559>))
 
@@ -10625,6 +10625,7 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CL_0000842> "BTO:0000878"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CL_0000842> "CALOHA:TS-0768"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CL_0000842> "FMA:86713"^^xsd:string)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CL_0000842> "mononuclear leukocyte")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym> <http://purl.obolibrary.org/obo/CL_0000842> "peripheral blood mononuclear cell"^^xsd:string)
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CL_0000842> "cell"^^xsd:string)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CL_0000842> "mononuclear cell"^^xsd:string)