preferred roots and cl-full

cl-base.obo

@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: cl/releases/2020-10-20/cl-base.owl
+data-version: cl/releases/2020-11-11/cl-base.owl
 subsetdef: ubprop:upper_level "abstract upper-level terms not directly useful for analysis"
 synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens"
 synonymtypedef: LATIN "latin term"
@@ -19,7 +19,8 @@ property_value: http://purl.org/dc/elements/1.1/description "An ontology of cell
 property_value: http://purl.org/dc/elements/1.1/title "Cell Ontology" xsd:string
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license http://creativecommons.org/licenses/by/4.0/
-property_value: owl:versionInfo "2020-10-20" xsd:string
+property_value: IAO:0000700 CL:0000000
+property_value: owl:versionInfo "2020-11-11" xsd:string
 
 [Term]
 id: CL:0000000
@@ -2212,7 +2213,7 @@ namespace: cell
 def: "A muscle cell that develops tension more slowly than a fast-twitch fiber." [GOC:tfm, ISBN:0323052908]
 synonym: "slow muscle fiber" RELATED [ISBN:0815316208]
 xref: FMA:84448
-is_a: CL:0008002 ! skeletal muscle fiber
+is_a: CL:0008046 ! extrafusal muscle fiber
 relationship: RO:0002202 CL:0000857 ! slow muscle myoblast
 
 [Term]
@@ -2221,7 +2222,7 @@ name: fast muscle cell
 namespace: cell
 def: "A muscle cell that can develop high tension rapidly. It is usually innervated by a single alpha neuron ." [GOC:tfm, ISBN:0323052908]
 synonym: "glycolytic muscle fiber" EXACT []
-is_a: CL:0008002 ! skeletal muscle fiber
+is_a: CL:0008046 ! extrafusal muscle fiber
 relationship: RO:0002202 CL:0000858 ! fast muscle myoblast
 
 [Term]
@@ -15220,7 +15221,7 @@ def: "A slow muscle cell that contains high levels of myoglobin and oxygen stori
 synonym: "oxidative muscle fiber" EXACT []
 synonym: "red muscle fiber" EXACT []
 xref: FMA:84448
-is_a: CL:0008002 ! skeletal muscle fiber
+is_a: CL:0008046 ! extrafusal muscle fiber
 created_by: tmeehan
 creation_date: 2010-09-02T03:20:03Z
 
@@ -15307,7 +15308,7 @@ name: intermediate muscle cell
 namespace: cell
 def: "An intermediate muscle cell that has characteristics of both fast and slow muscle cells." [GOC:tfm]
 xref: FMA:84450
-is_a: CL:0008002 ! skeletal muscle fiber
+is_a: CL:0008046 ! extrafusal muscle fiber
 created_by: tmeehan
 creation_date: 2010-09-02T03:51:17Z
 
@@ -20930,6 +20931,10 @@ id: CL:0005012
 name: multi-ciliated epithelial cell
 namespace: cell
 def: "A ciliated epithelial cell with many cilium." [CL:CVS]
+synonym: "MCC" BROAD []
+synonym: "multi-ciliated cell" BROAD []
+synonym: "multiciliated cell" BROAD []
+synonym: "multiciliated epithelial cell" EXACT []
 is_a: CL:0000066 ! epithelial cell
 relationship: BFO:0000051 GO:0005929
 
@@ -21620,6 +21625,29 @@ relationship: RO:0002162 NCBITaxon:7742
 created_by: dos
 creation_date: 2020-09-23T20:22:07Z
 
+[Term]
+id: CL:0008046
+name: extrafusal muscle fiber
+def: "A skeletal muscle fiber that is innervated by alpha motor neuron and generates tension by contracting, thereby allowing for skeletal movement. These fibers make up the large mass of skeletal muscle tissue and are attached to bones by tendons." [DOI:10.1016/B978-0-443-10321-6.00004-7, Wikipedia:Extrafusal_muscle_fiber&oldid=978415293]
+synonym: "myofibra extrafusalis" EXACT []
+xref: TH:H3.03.00.0.00007
+is_a: CL:0008002 ! skeletal muscle fiber
+disjoint_from: CL:0008047 ! intrafusal muscle fiber
+relationship: RO:0002103 CL:0008038 ! alpha motor neuron
+created_by: dos
+creation_date: 2020-09-26T21:06:15Z
+
+[Term]
+id: CL:0008047
+name: intrafusal muscle fiber
+def: "A skeletal muscle fiber that is part of a muscle spindle. These are specialized muscle fibers that serve as proprioceptors, detecting the amount and rate of change in length of a muscle. They are innervated by both sensory neurons and motor neurons (gamma and beta motorneurons, collectively referred to as fusimotor neurons)." [DOI:10.1016/B978-0-443-10321-6.00004-7, Wikipedia:Intrafusal_muscle_fiber&oldid=937508784]
+synonym: "myofibra intrafusalis" EXACT []
+xref: H3.03.00.0.00012
+intersection_of: CL:0008002 ! skeletal muscle fiber
+intersection_of: BFO:0000050 UBERON:0003718
+created_by: dos
+creation_date: 2020-09-26T21:07:01Z
+
 [Term]
 id: CL:0009000
 name: sensory neuron of spinal nerve
@@ -22290,6 +22318,26 @@ intersection_of: BFO:0000050 UBERON:0007196
 property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-2034-601X
 property_value: http://purl.org/dc/elements/1.1/date 2020-07-21T12:50:22Z xsd:dateTime
 
+[Term]
+id: CL:0019031
+name: intestine goblet cell
+def: "Goblet cells reside throughout the length of the small and large intestine and are responsible for the production and maintenance of the protective mucus blanket by synthesizing and secreting high-molecular-weight glycoproteins known as mucins. Human intestinal goblet cells secrete the MUC2 mucin, as well as a number of typical mucus components: CLCA1, FCGBP, AGR2, ZG16, and TFF3." [PMID:1996606, PMID:24942678]
+synonym: "intestinal goblet cell" EXACT [PMID:1996606]
+intersection_of: CL:0000160 ! goblet cell
+intersection_of: BFO:0000050 UBERON:0001277
+property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-2034-601X
+property_value: http://purl.org/dc/elements/1.1/date 2020-10-14T14:59:07Z xsd:dateTime
+
+[Term]
+id: CL:0019032
+name: intestinal tuft cell
+def: "Any brush cell that is part of the intestinal epithelium." [PMID:22527717]
+synonym: "intestinal brush cell" EXACT [PMID:22527717]
+intersection_of: CL:0002204 ! brush cell
+intersection_of: BFO:0000050 UBERON:0001277
+property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0003-2034-601X
+property_value: http://purl.org/dc/elements/1.1/date 2020-10-15T12:47:46Z xsd:dateTime
+
 [Term]
 id: CL:1000001
 name: retrotrapezoid nucleus neuron