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Addresses #1582-NTR-epithelial_cells_DCT #1644

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6 commits merged into from
Jun 24, 2022
Merged

Addresses #1582-NTR-epithelial_cells_DCT #1644

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60bb841
Addresses #1582-NTR-epithelial_cells_DCT
Jun 21, 2022
5f0d304
Update cl-edit.owl
Jun 22, 2022
532f9c7
refreshed import for UBERON terms
Jun 23, 2022
4dea1dc
Merge branch 'master' of https://github.com/obophenotype/cell-ontolog…
Jun 23, 2022
8b67e67
Updated import, added EAs
Jun 23, 2022
1a6447d
Update cl-edit.owl
Jun 23, 2022
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25 changes: 25 additions & 0 deletions src/ontology/cl-edit.owl
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Expand Up @@ -2676,6 +2676,8 @@ Declaration(Class(obo:CL_4030012))
Declaration(Class(obo:CL_4030013))
Declaration(Class(obo:CL_4030014))
Declaration(Class(obo:CL_4030015))
Declaration(Class(obo:CL_4030016))
Declaration(Class(obo:CL_4030017))
Declaration(Class(obo:CP_0000000))
Declaration(Class(obo:CP_0000025))
Declaration(Class(obo:CP_0000027))
Expand Down Expand Up @@ -2731,6 +2733,8 @@ Declaration(Class(obo:UBERON_0002707))
Declaration(Class(obo:UBERON_0003718))
Declaration(Class(obo:UBERON_0004024))
Declaration(Class(obo:UBERON_0004026))
Declaration(Class(obo:UBERON_0005101))
Declaration(Class(obo:UBERON_0005102))
Declaration(Class(obo:UBERON_0006841))
Declaration(Class(obo:UBERON_8400006))
Declaration(Class(obo:UBERON_8400007))
Expand Down Expand Up @@ -28080,6 +28084,27 @@ AnnotationAssertion(rdfs:label obo:CL_4030015 "collecting duct intercalated cell
SubClassOf(obo:CL_4030015 obo:CL_0005011)
SubClassOf(obo:CL_4030015 obo:CL_1001432)

# Class: obo:CL_4030016 (epithelial cell of early distal convoluted tubule)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <http://orcid.org/0000-0003-2804-127X>) Annotation(oboInOwl:hasDbXref "PMID:24855283"^^xsd:string) obo:IAO_0000115 obo:CL_4030016 "Epithelial cell located in the early distal convoluted tubule."^^xsd:string)
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AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030016 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030016 "2022-06-21T12:47:48Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24855283"^^xsd:string) oboInOwl:hasBroadSynonym obo:CL_4030016 "DCT1 cell"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_4030016 "epithelial cell of early distal convoluted tubule")
SubClassOf(obo:CL_4030016 obo:CL_1000849)
SubClassOf(obo:CL_4030016 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005101))
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# Class: obo:CL_4030017 (epithelial cell of late distal convoluted tubule)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref <http://orcid.org/0000-0003-2804-127X>) Annotation(oboInOwl:hasDbXref "PMID:24855283"^^xsd:string) obo:IAO_0000115 obo:CL_4030017 "Epithelial cell located in the late distal convoluted tubule."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4030017 <https://orcid.org/0000-0002-1773-2692>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4030017 "2022-06-21T13:51:46Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24855283"^^xsd:string) oboInOwl:hasBroadSynonym obo:CL_4030017 "DCT2 cell"^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24855283"^^xsd:string) rdfs:comment obo:CL_4030017 "Although mineralocorticoid receptors are expressed throughout the entire [distal convoluted tubule], the DCT2 is sensitive to the actions of aldosterone, because it expresses an enzyme called 11-β hydroxysteroid dehydrogenase 2 (11-βHSD2)"^^xsd:string)
AnnotationAssertion(rdfs:label obo:CL_4030017 "epithelial cell of late distal convoluted tubule")
SubClassOf(obo:CL_4030017 obo:CL_1000849)
SubClassOf(obo:CL_4030017 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0005102))

# Class: obo:CP_0000000 (obsolete CP:0000000)

AnnotationAssertion(obo:IAO_0100001 obo:CP_0000000 obo:CL_0017500)
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1 change: 1 addition & 0 deletions src/ontology/cl-odk.yaml
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Expand Up @@ -87,3 +87,4 @@ components:
products:
- filename: hra_subset.owl
- filename: mappings.owl
robot_java_args: '-Xmx8G'
18 changes: 18 additions & 0 deletions src/ontology/components/hra_subset.owl
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Expand Up @@ -1693,6 +1693,15 @@



<!-- http://purl.obolibrary.org/obo/CL_0002196 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0002196">
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas"/>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/CL_0002201 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0002201">
Expand Down Expand Up @@ -1981,6 +1990,15 @@



<!-- http://purl.obolibrary.org/obo/CL_0002536 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0002536">
<obo:RO_0002175 rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas"/>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/CL_0002543 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CL_0002543">
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3 changes: 3 additions & 0 deletions src/ontology/components/mappings.owl
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Expand Up @@ -142,6 +142,9 @@
<Class rdf:about="http://purl.obolibrary.org/obo/CL_0000381">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00005130</oboInOwl:hasDbXref>
</Class>
<Class rdf:about="http://purl.obolibrary.org/obo/CL_0000850">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00005133</oboInOwl:hasDbXref>
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@gouttegd - could you help make sure this is correct - I think it got updated with import updates

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That’s correct, yes. It’s a change that I made recently in the FBbt-to-CL mappings. That it got picked up during an import update is the expected behaviour, I believe.

</Class>
<Class rdf:about="http://purl.obolibrary.org/obo/CL_0000125">
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FBbt:00005144</oboInOwl:hasDbXref>
</Class>
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