Add mappings to phenotypic series in OMIM #25
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First task is to bring in the PS to OMIM mapping into the pipeline, assigning @nlwashington, handed off to me after that |
Good idea. Cheers, On Mon, Feb 9, 2015 at 5:58 PM, Chris Mungall notifications@github.com
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unassigning @nlwashington we now have the PS IDs http://nif-crawler.neuinfo.org/monarch/ttl/omim.ttl @lschriml we can't have anything non-equivalent as an equivalence axiom. We can use an annotation axiom such as dbxref for these if really useful. But let's do an analysis first. I would be curious to see the ones that don't map and the reason why. I would hope we could all come to an agreement on what are sensible groupings. |
What is curious is the cases where no PS exists where we would expect one; e.g. Alzheimers. |
Currently with DO to OMIM xrefs it isn't clear what should be subclass and what should be equivalent
I suggest we add equivalence axioms to PS IDs where they exist
E.g. http://www.omim.org/phenotypicSeries/PS209850
E.g. xref: OMIM:PS209850
We then no longer need to manually maintain xrefs to all the individual sub-types - can be extracted from the up-to-date OMIM ID <-> PS ID provided by OMIM
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