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obophenotype · Sep 20, 2012 · 047aa5a · 047aa5a
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diff --git a/README-editors.txt b/README-editors.txt
@@ -14,7 +14,7 @@ Workflow:
   make uberon-qc
   git commit -m 'type message here'
   git push
-  # check Jenkins
+  # check Jenkins - http://build.berkeleybop.org/job/build-uberon/
 
 Releases:
 

diff --git a/mod/uberon-bridge-to-aao.obo b/mod/uberon-bridge-to-aao.obo
@@ -2826,30 +2826,12 @@ property_value: IAO:0000589 "perichordal ring (amphibian)" xsd:string
 intersection_of: UBERON:0011675 ! perichordal ring
 intersection_of: part_of NCBITaxon:8292
 
-[Term]
-id: AAO:0010777 ! perichordal bone
-property_value: IAO:0000589 "perichordal bone (amphibian)" xsd:string
-intersection_of: UBERON:0008909 ! perichordal bone
-intersection_of: part_of NCBITaxon:8292
-
 [Term]
 id: AAO:0010445 ! perichondrium
 property_value: IAO:0000589 "perichondrium (amphibian)" xsd:string
 intersection_of: UBERON:0002222 ! perichondrium
 intersection_of: part_of NCBITaxon:8292
 
-[Term]
-id: AAO:0010779 ! perichondral bone
-property_value: IAO:0000589 "perichondral bone (amphibian)" xsd:string
-intersection_of: UBERON:0008913 ! perichondral bone
-intersection_of: part_of NCBITaxon:8292
-
-[Term]
-id: AAO:0010774 ! chondral bone
-property_value: IAO:0000589 "chondral bone (amphibian)" xsd:string
-intersection_of: UBERON:0008911 ! chondral bone
-intersection_of: part_of NCBITaxon:8292
-
 [Term]
 id: AAO:0011018 ! basilar papilla
 property_value: IAO:0000589 "spiral organ of cochlea (amphibian)" xsd:string
@@ -3092,8 +3074,26 @@ intersection_of: part_of NCBITaxon:8292
 
 [Term]
 id: AAO:0010768 ! replacement bone
-property_value: IAO:0000589 "endochondral bone tissue (amphibian)" xsd:string
-intersection_of: UBERON:0004763 ! endochondral bone tissue
+property_value: IAO:0000589 "replacement bone (amphibian)" xsd:string
+intersection_of: UBERON:0012075 ! replacement bone
+intersection_of: part_of NCBITaxon:8292
+
+[Term]
+id: AAO:0010774 ! chondral bone
+property_value: IAO:0000589 "chondral bone (amphibian)" xsd:string
+intersection_of: UBERON:0008911 ! chondral bone
+intersection_of: part_of NCBITaxon:8292
+
+[Term]
+id: AAO:0010777 ! perichordal bone
+property_value: IAO:0000589 "perichordal bone (amphibian)" xsd:string
+intersection_of: UBERON:0008909 ! perichordal bone
+intersection_of: part_of NCBITaxon:8292
+
+[Term]
+id: AAO:0010779 ! perichondral bone
+property_value: IAO:0000589 "perichondral bone (amphibian)" xsd:string
+intersection_of: UBERON:0008913 ! perichondral bone
 intersection_of: part_of NCBITaxon:8292
 
 [Term]

diff --git a/mod/uberon-bridge-to-aao.owl b/mod/uberon-bridge-to-aao.owl
@@ -12622,7 +12622,7 @@
         <owl:equivalentClass>
             <owl:Class>
                 <owl:intersectionOf rdf:parseType="Collection">
-                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0004763"/>
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012075"/>
                     <owl:Restriction>
                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
                         <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_8292"/>
@@ -12631,7 +12631,7 @@
             </owl:Class>
         </owl:equivalentClass>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">AAO:0010768</oboInOwl:id>
-        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">endochondral bone tissue (amphibian)</obo:IAO_0000589>
+        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">replacement bone (amphibian)</obo:IAO_0000589>
     </owl:Class>
 
 
@@ -18762,12 +18762,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/UBERON_0004763 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004763"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/UBERON_0004765 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004765"/>
@@ -20073,6 +20067,12 @@
     <!-- http://purl.obolibrary.org/obo/UBERON_0011879 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0011879"/>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/UBERON_0012075 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012075"/>
 </rdf:RDF>
 
 

diff --git a/mod/uberon-bridge-to-tao.owl b/mod/uberon-bridge-to-tao.owl
@@ -13532,7 +13532,7 @@
         <owl:equivalentClass>
             <owl:Class>
                 <owl:intersectionOf rdf:parseType="Collection">
-                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0004763"/>
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012075"/>
                     <owl:Restriction>
                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
                         <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_32443"/>
@@ -13541,7 +13541,7 @@
             </owl:Class>
         </owl:equivalentClass>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAO:0001637</oboInOwl:id>
-        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">endochondral bone tissue (teleost)</obo:IAO_0000589>
+        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">replacement bone (teleost)</obo:IAO_0000589>
     </owl:Class>
 
 
@@ -22368,12 +22368,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/UBERON_0004763 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004763"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/UBERON_0004765 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004765"/>
@@ -24492,6 +24486,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0012075 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012075"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_1000010 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_1000010"/>

diff --git a/mod/uberon-bridge-to-xao.obo b/mod/uberon-bridge-to-xao.obo
@@ -2371,7 +2371,7 @@ intersection_of: UBERON:0010522 ! replacement element
 intersection_of: part_of NCBITaxon:8353
 
 [Term]
-id: XAO:0004017 ! endochondral elemen
+id: XAO:0004017 ! endochondral element
 property_value: IAO:0000589 "endochondral element (xenopus)" xsd:string
 intersection_of: UBERON:0010363 ! endochondral element
 intersection_of: part_of NCBITaxon:8353

diff --git a/mod/uberon-bridge-to-zfa.obo b/mod/uberon-bridge-to-zfa.obo
@@ -2976,30 +2976,12 @@ property_value: IAO:0000589 "perichordal tissue (zebrafish)" xsd:string
 intersection_of: UBERON:0007862 ! perichordal tissue
 intersection_of: part_of NCBITaxon:7954
 
-[Term]
-id: ZFA:0001629 ! perichordal bone
-property_value: IAO:0000589 "perichordal bone (zebrafish)" xsd:string
-intersection_of: UBERON:0008909 ! perichordal bone
-intersection_of: part_of NCBITaxon:7954
-
 [Term]
 id: ZFA:0001634 ! perichondrium
 property_value: IAO:0000589 "perichondrium (zebrafish)" xsd:string
 intersection_of: UBERON:0002222 ! perichondrium
 intersection_of: part_of NCBITaxon:7954
 
-[Term]
-id: ZFA:0001630 ! perichondral bone
-property_value: IAO:0000589 "perichondral bone (zebrafish)" xsd:string
-intersection_of: UBERON:0008913 ! perichondral bone
-intersection_of: part_of NCBITaxon:7954
-
-[Term]
-id: ZFA:0001693 ! chondral bone
-property_value: IAO:0000589 "chondral bone (zebrafish)" xsd:string
-intersection_of: UBERON:0008911 ! chondral bone
-intersection_of: part_of NCBITaxon:7954
-
 [Term]
 id: ZFA:0000538 ! rib
 property_value: IAO:0000589 "rib (zebrafish)" xsd:string
@@ -3410,8 +3392,26 @@ intersection_of: part_of NCBITaxon:7954
 
 [Term]
 id: ZFA:0001628 ! replacement bone
-property_value: IAO:0000589 "endochondral bone tissue (zebrafish)" xsd:string
-intersection_of: UBERON:0004763 ! endochondral bone tissue
+property_value: IAO:0000589 "replacement bone (zebrafish)" xsd:string
+intersection_of: UBERON:0012075 ! replacement bone
+intersection_of: part_of NCBITaxon:7954
+
+[Term]
+id: ZFA:0001693 ! chondral bone
+property_value: IAO:0000589 "chondral bone (zebrafish)" xsd:string
+intersection_of: UBERON:0008911 ! chondral bone
+intersection_of: part_of NCBITaxon:7954
+
+[Term]
+id: ZFA:0001629 ! perichordal bone
+property_value: IAO:0000589 "perichordal bone (zebrafish)" xsd:string
+intersection_of: UBERON:0008909 ! perichordal bone
+intersection_of: part_of NCBITaxon:7954
+
+[Term]
+id: ZFA:0001630 ! perichondral bone
+property_value: IAO:0000589 "perichondral bone (zebrafish)" xsd:string
+intersection_of: UBERON:0008913 ! perichondral bone
 intersection_of: part_of NCBITaxon:7954
 
 [Term]

diff --git a/mod/uberon-bridge-to-zfa.owl b/mod/uberon-bridge-to-zfa.owl
@@ -3674,12 +3674,6 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/UBERON_0004763 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004763"/>
-
-
-
     <!-- http://purl.obolibrary.org/obo/UBERON_0004765 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0004765"/>
@@ -5816,6 +5810,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0012075 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0012075"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_1000010 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_1000010"/>
@@ -19254,7 +19254,7 @@
         <owl:equivalentClass>
             <owl:Class>
                 <owl:intersectionOf rdf:parseType="Collection">
-                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0004763"/>
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/UBERON_0012075"/>
                     <owl:Restriction>
                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
                         <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_7954"/>
@@ -19263,7 +19263,7 @@
             </owl:Class>
         </owl:equivalentClass>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ZFA:0001628</oboInOwl:id>
-        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">endochondral bone tissue (zebrafish)</obo:IAO_0000589>
+        <obo:IAO_0000589 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">replacement bone (zebrafish)</obo:IAO_0000589>
     </owl:Class>