Fixing unsatisfiable classes due to peritoneum vs peritoneal sac issu…

…es. Related to #86

uberon_edit.obo

@@ -86374,7 +86374,7 @@ xref: EHDAA2:0000267 ! coelomic cavity lumen
 xref: RETIRED_EHDAA2:0003186 ! body cavity
 xref: AEO:0000186 ! body cavity
 is_a: UBERON:0002553 ! anatomical cavity
-relationship: luminal_space_of UBERON:0002323 ! coelemic cavity lumen
+relationship: luminal_space_of UBERON:0011997 ! coelom
 relationship: transformation_of UBERON:0003886 {evidence="definitional"} ! body cavity precursor
 xref: SCTID:361348008 ! Entire body cavity
 property_value: external_definition "Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]." xsd:string {ontology="ZFA", external_class="ZFA:0001438", date_retrieved="2012-09-12", source="ZFIN:curator"}
@@ -86406,7 +86406,7 @@ xref: FMA:9908 ! peritoneal sac
 [Term]
 id: UBERON:0001179
 name: peritoneal cavity
-def: "Anatomical cavity bounded by visceral and parietal peritoneum" [http://orcid.org/0000-0002-6601-2165, Wikipedia:Peritoneal_cavity]
+def: "Anatomical cavity bounded by visceral and parietal peritoneum" [http://orcid.org/0000-0002-6601-2165, Wikipedia:Peritoneal_cavity, https://github.com/obophenotype/uberon/issues/86]
 xref: Wikipedia:Peritoneal_cavity
 subset: uberon_slim
 synonym: "cavitas peritonealis" RELATED [BTO:0001782]
@@ -86422,7 +86422,7 @@ xref: EMAPA:16886 ! greater sac cavity
 xref: EMAPA:18461 ! omental bursa cavity
 xref: MESH:A01.047.025.600.678 ! peritoneal cavity
 intersection_of: UBERON:0002553 ! anatomical cavity
-intersection_of: luminal_space_of UBERON:0002358 ! peritoneum
+intersection_of: luminal_space_of UBERON:0035820 ! peritoneal sac
 intersection_of: adjacent_to UBERON:0001178 ! visceral peritoneum
 intersection_of: adjacent_to UBERON:0001366 ! parietal peritoneum
 relationship: part_of UBERON:0035820 ! peritoneal sac
@@ -149819,6 +149819,7 @@ name: greater sac
 synonym: "peritoneum of the peritoneal cavity proper" RELATED [Wikipedia:Greater_sac]
 synonym: "general cavity of the abdomen" RELATED [Wikipedia:Greater_sac]
 synonym: "peritoneal cavity greater sac" EXACT [MA:0000448]
+xref: Wikipedia:Greater_sac
 xref: FMA:19799 ! Greater sac
 xref: EHDAA2_RETIRED:0000722 ! greater sac
 xref: EMAPA:16885 ! greater sac
@@ -149827,15 +149828,14 @@ xref: MA:0000448 ! peritoneal cavity greater sac
 xref: EHDAA:2327 ! greater sac
 xref: EHDAA2:0004738 ! greater sac
 is_a: UBERON:0000064 ! organ part
-relationship: part_of UBERON:0002358 ! peritoneum
+relationship: part_of UBERON:0035820 ! peritoneal sac
 relationship: located_in UBERON:0001179 ! peritoneal cavity
 property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/8/8d/Gray1035.png
 
 [Term]
 id: UBERON:0005450
 name: greater sac cavity
 def: "The cavity in the abdomen that is inside the peritoneum but outside of the lesser sac. [WP,unvetted]." [Wikipedia:Greater_sac]
-xref: Wikipedia:Greater_sac
 synonym: "cavum peritonei" EXACT [FMA:9691]
 synonym: "greater peritoneal cavity" EXACT [FMA:9691]
 synonym: "cavity of greater sac" EXACT [FMA:9691]
@@ -149849,12 +149849,13 @@ intersection_of: luminal_space_of UBERON:0005449 ! greater sac
 relationship: part_of UBERON:0005449 ! greater sac
 relationship: develops_in UBERON:0001179 {source="EHDAA2"} ! peritoneal cavity
 
-
 [Term]
 id: UBERON:0001341
 name: lesser sac
-def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted]." [Wikipedia:Lesser_sac]
+def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). [WP,unvetted]." [Wikipedia:Lesser_sac]
 xref: Wikipedia:Lesser_sac
+comment: Development notes: The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach
+comment: Taxon notes: In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac
 property_value: external_ontology_notes "classified as a cavity in EHDAA2, so this truly corresponds to FMA 'Cavity of lesser sac' - we hedge for now; todo - treat same as greater sac" xsd:string {external_ontology="EHDAA2"}
 subset: uberon_slim
 synonym: "omental bursa" EXACT []
@@ -149868,7 +149869,7 @@ xref: EHDAA2:0004554 ! lesser sac
 property_value: foaf-depicted_by http://upload.wikimedia.org/wikipedia/commons/c/c5/Peritoneum.svg
 xref: EMAPA:16889 ! omental bursa
 is_a: UBERON:0000063 ! organ subunit
-relationship: part_of UBERON:0002358 ! peritoneum
+relationship: part_of UBERON:0035820 ! peritoneal sac
 relationship: located_in UBERON:0001179 ! peritoneal cavity
 xref: NCIT:C81014 ! Omental Bursa
 property_value: external_definition "The lesser sac of the peritoneum. Part of the peritoneal cavity behind the liver, lesser omentum and stomach. It lies across the transverse mesocolon and extends into the greater omentum. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {ontology="VHOG", external_class="VHOG:0000458", date_retrieved="2012-09-17", source="http://bgee.unil.ch/"}