subset of Uberon updates

[jinhuiz]

Hi,

I am trying to build avian anatomical ontology. I started with aves subset of Uberon released some time ago. I am wondering how I could have updated aves subset of Uberon every time Uberon releases new version?

thank you,

Jinhui Zhang

[cmungall]

We're currently running into memory issues with the current approach for species subsetting for anything outside the mammals. The options are 1 - you can run the subsetting tool yourself (I think 20G ram should be fine) 2 - you can wait til we refactor the subsetter to use a different strategy 3 - you can wait til we shift the pipeline to a different machine I'm afraid that I don't have a timeline for 2 or 3 right now. Hopefully we should have some good news in the next week that may help with this.

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On 8 Mar 2017, at 22:20, jinhuiz wrote: Hi, I am trying to build avian anatomical ontology. I started with aves subset of Uberon released some time ago. I am wondering how I could have updated aves subset of Uberon every time Uberon releases new version? thank you, Jinhui Zhang -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: #1310

[gouttegd]

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