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Risorius muscle #488

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RDruzinsky opened this issue Jun 18, 2014 · 8 comments
Closed

Risorius muscle #488

RDruzinsky opened this issue Jun 18, 2014 · 8 comments
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autoclosed-unfixed This issue has been closed automatically. FEED

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@RDruzinsky
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How do people feel about this one?

image
@cewall
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cewall commented Jun 19, 2014

Good.  Fascia is I think mis-spelled.

----- Original Message -----
From: "obophenotype/uberon"
To:"obophenotype/uberon"
Cc:
Sent:Wed, 18 Jun 2014 12:48:52 -0700
Subject:[uberon] Risorius muscle (#488)

How do people feel about this one? 

 [1] 

—

Reply to this email directly or view it on GitHub [2].

Links:

[1]
https://cloud.githubusercontent.com/assets/4268088/3319548/8f85e502-f721-11e3-9ffa-19099c5ef674.png
[2] #488

@willias7
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Agreed (good def and fascia is missing an S)

@RDruzinsky
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Fixed. Thanks

@cmungall
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how should we capture the relationship to the parotid gland? Is it valid to consider this as a kind of transitive attachment: risorius to fascia of PG to PG?

@cmungall
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We could add a class 'parotid fascia'

cmungall added a commit that referenced this issue Jul 23, 2014
@cmungall
aligned risorius. Issue #488
581a370
@RDruzinsky
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I think that the attachment to the fascia of the parotid is taxon specific. We could add the 'parotid facia' class and an attachment to it for specific taxa.
Thinking about it, once the axioms are in Uberon, since Uberon breaks muscle organs into proper components, we could be more specific re: the attachment to the masseter and say that it attaches to the epimysium surrounding the masseter.

@cmungall
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Before pre-composing terms like 'fascia of masseter' it would be useful to review the classification of fascia in uberon and other sources, it's not completely straightforward.

Of course, you don't need pre-composed terms. You could say

attaches to some (fascia and bounding_layer_of some masseter)

But before going down this route, we have to think about how properties chain. Presumably you would want risorious to be returned in a query for all muscles that attach to the masseter? If so we need a rule that chains attaches_to appropriately.

cmungall added a commit that referenced this issue Jul 24, 2014
@cmungall
made attachment to parotid species-specific. Issue #488
7921a79
cmungall added a commit that referenced this issue Aug 19, 2014
@cmungall
This release incorporates new terms and improvements to feeding muscl…
b540355 
…es courtesy of Robert Druzisnky and the FEED group. For more details see:

http://www.feedexp.org/wiki/

 * FEED
    * anterior digastric, from FEED. Fixes issue #538
    * changed scope of syns for lateral ptyeryoid to exact, vetted by FEED:rd. Issue #539
    * aligned masseter with FEED. Fixes issue #540
    * logical def of mentalis. Fixes issue #483
    * made attachment to parotid species-specific. Issue #488
    * NT: symphyseal region. Issue #483
    * aligned risorius. Issue #488
    * aligned zygomaticus major. Fixes issue #491
    * aligned zygomaticus major. Fixes issue #492
    * tagged Crico-arytenoid muscle as candidate for deletion. Issue #530
 * BGee:
    * fixed multi-cell-component axiom. Issue #541
    * added: pharyngula part_of organogenesis. Bgee:FB Fixes issue #533
    * tadpode stage "wholly aquatic larval stage in the life cycle of an amphibian" is_a amphibian larval stage. Bgee:FB Fixes issue #534
    * spelling: multi-cellular=>multicellular. Fixes issue #474
    * made life stage a proper part of life cycle. Added starts and ends with. Fixues issue #532
 * Other
    * various def changes. NTs: Feather types by body location
    * Removed ref to obs taxon. Issue #531
    * further cardiac conduction system enhancesents - provenance of syns and relationships
    * Fixed isa->part_of for conducting system of heart. Issue #527
    * nucleus accumbens dupe syn fixed
    * fixed def of sense organ
    * merged substance of tooth into odontoid tissue
cmungall added a commit that referenced this issue Aug 19, 2014
@cmungall
This release incorporates new terms and improvements to feeding muscl…
2300164 
…es courtesy of Robert Druzisnky and the FEED group. For more details see: http://www.feedexp.org/wiki/

 * FEED
    * anterior digastric, from FEED. Fixes issue #538
    * changed scope of syns for lateral ptyeryoid to exact, vetted by FEED:rd. Issue #539
    * aligned masseter with FEED. Fixes issue #540
    * logical def of mentalis. Fixes issue #483
    * made attachment to parotid species-specific. Issue #488
    * NT: symphyseal region. Issue #483
    * aligned risorius. Issue #488
    * aligned zygomaticus major. Fixes issue #491
    * aligned zygomaticus major. Fixes issue #492
    * tagged Crico-arytenoid muscle as candidate for deletion. Issue #530
 * BGee:
    * fixed multi-cell-component axiom. Issue #541
    * added: pharyngula part_of organogenesis. Bgee:FB Fixes issue #533
    * tadpode stage "wholly aquatic larval stage in the life cycle of an amphibian" is_a amphibian larval stage. Bgee:FB Fixes issue #534
    * spelling: multi-cellular=>multicellular. Fixes issue #474
    * made life stage a proper part of life cycle. Added starts and ends with. Fixues issue #532
 * Other
    * various def changes. NTs: Feather types by body location
    * Removed ref to obs taxon. Issue #531
    * further cardiac conduction system enhancesents - provenance of syns and relationships
    * Fixed isa->part_of for conducting system of heart. Issue #527
    * nucleus accumbens dupe syn fixed
    * fixed def of sense organ
    * merged substance of tooth into odontoid tissue
    * NT: ventral wall of dorsal aorta
    * Fixed test def on sense organ. Fixes issue #549
    * added TODOs for issue #547 (genitals) - punted til next release
    * facial nerve fixes. Syn addition
@gouttegd
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gouttegd commented Aug 3, 2021

WARNING: This issue has been automatically closed because it has not been updated in more than 3 years. Please re-open it if you still need this to be addressed addressed addressed – we are now getting some resources to deal with such issues.

@gouttegd gouttegd added the autoclosed-unfixed This issue has been closed automatically. label Aug 3, 2021
@gouttegd gouttegd closed this as completed Aug 3, 2021
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@cmungall @RDruzinsky @cewall @willias7 @gouttegd