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If a ZFIN term uses an obsolete class, this should be flagged #27

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matentzn opened this issue Oct 23, 2019 · 2 comments
Open

If a ZFIN term uses an obsolete class, this should be flagged #27

matentzn opened this issue Oct 23, 2019 · 2 comments
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enhancement New feature or request

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@matentzn
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Output should be a table with
ZP, ZFIN EQ ID, OBSOLETE CLASS
ZP:001,0-0-0-PATO:001-0-0-0,GO:0001
@matentzn
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Kinds of obsoletion:

  • using a deprecated/wrong pattern (i.e. relation etc)
  • using obsolete terms from another ontology

Not obsolete:

  • no longer used but still makes sense

@matentzn matentzn self-assigned this Oct 23, 2019
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ROBOT report does that, but currently no special treatment. Should be in SOP how to deal with this!

@matentzn matentzn added the enhancement New feature or request label Nov 12, 2019
@matentzn matentzn changed the title If a ZFIN term uses and obsolete class, this should be flagged If a ZFIN term uses an obsolete class, this should be flagged Nov 12, 2019
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