Dirichlet concentration parameter is now actually being used #315
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osorensen
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Oct 4, 2023
* Removed duplicated output element (#291) * Removed duplicated output element * Updated package version and NEWS * Should fix #292 (#293) * Updated NEWS and increment version * Updated citation info in README * Should fix #299 (#300) * Should fix #299 * Added missing documentation objects and changed the name of one argument * Fixed another documentation issue * Removed deprecated SMC functions (#303) * Updated build version number * Increment version number to 1.3.2.9002 * Removed deprecated SMC functions (#301) * Updated NEWS (#301) * Logz issue 158 (#304) * Added exact partition function option * Updated tests * Updated SMC Mallows examples * Styling * More linting * Updated linter workflow Some linter were deprecated, ignored line on vignette needed update * Trying to please CodeFactor * Incremented version number and added entry to NEWS.md --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Added BugReport URL (#308) * Added URL for bug reports * Increment version number to 1.3.2.9004 * Small typo correction and documentation update * Website (#310) * Website * De-duplicating vignettes * Adding GH Action for pkgdown (#290) Literally the output of `usethis::use_github_action("pkgdown")` * Triggering `gh-pages` when pushing to PR #310 (tests) This is just for testing the online deployment and should be removed after merge (or just before). --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Small changes (#311) * Small changes * Fixed gh-pages bases for deployment (#290) The PR branch was left over. More importantly, the file listed "main" instead of "master". --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Corrected small typo in documentation * Cleaner unit test output (#314) * Increment version number to 1.3.2.9006 * Capturing output of test unit * Dirichlet concentration parameter is now actually being used (#315) * forwarded psi argument to run_mcmc * Incremented version and updated news.md * ready for cran submission * CRAN wanted a trailing slash in the URL to the website, since it becomes added automatically if one follows the URL --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no>
osorensen
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Oct 5, 2023
* Removed duplicated output element (#291) * Removed duplicated output element * Updated package version and NEWS * Should fix #292 (#293) * Updated NEWS and increment version * Updated citation info in README * Should fix #299 (#300) * Should fix #299 * Added missing documentation objects and changed the name of one argument * Fixed another documentation issue * Removed deprecated SMC functions (#303) * Updated build version number * Increment version number to 1.3.2.9002 * Removed deprecated SMC functions (#301) * Updated NEWS (#301) * Logz issue 158 (#304) * Added exact partition function option * Updated tests * Updated SMC Mallows examples * Styling * More linting * Updated linter workflow Some linter were deprecated, ignored line on vignette needed update * Trying to please CodeFactor * Incremented version number and added entry to NEWS.md --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Added BugReport URL (#308) * Added URL for bug reports * Increment version number to 1.3.2.9004 * Small typo correction and documentation update * Website (#310) * Website * De-duplicating vignettes * Adding GH Action for pkgdown (#290) Literally the output of `usethis::use_github_action("pkgdown")` * Triggering `gh-pages` when pushing to PR #310 (tests) This is just for testing the online deployment and should be removed after merge (or just before). --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Small changes (#311) * Small changes * Fixed gh-pages bases for deployment (#290) The PR branch was left over. More importantly, the file listed "main" instead of "master". --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Corrected small typo in documentation * Cleaner unit test output (#314) * Increment version number to 1.3.2.9006 * Capturing output of test unit * Dirichlet concentration parameter is now actually being used (#315) * forwarded psi argument to run_mcmc * Incremented version and updated news.md * ready for cran submission * CRAN wanted a trailing slash in the URL to the website, since it becomes added automatically if one follows the URL * Internalized a bunch of SMC functions and made families #312 * incrementing development versions * updating news.md * linting * fixed most of the thigns * incremented dev version * Fixed lint issues --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no>
osorensen
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Oct 5, 2023
* Removed duplicated output element (#291) * Removed duplicated output element * Updated package version and NEWS * Should fix #292 (#293) * Updated NEWS and increment version * Updated citation info in README * Should fix #299 (#300) * Should fix #299 * Added missing documentation objects and changed the name of one argument * Fixed another documentation issue * Removed deprecated SMC functions (#303) * Updated build version number * Increment version number to 1.3.2.9002 * Removed deprecated SMC functions (#301) * Updated NEWS (#301) * Logz issue 158 (#304) * Added exact partition function option * Updated tests * Updated SMC Mallows examples * Styling * More linting * Updated linter workflow Some linter were deprecated, ignored line on vignette needed update * Trying to please CodeFactor * Incremented version number and added entry to NEWS.md --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Added BugReport URL (#308) * Added URL for bug reports * Increment version number to 1.3.2.9004 * Small typo correction and documentation update * Website (#310) * Website * De-duplicating vignettes * Adding GH Action for pkgdown (#290) Literally the output of `usethis::use_github_action("pkgdown")` * Triggering `gh-pages` when pushing to PR #310 (tests) This is just for testing the online deployment and should be removed after merge (or just before). --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Small changes (#311) * Small changes * Fixed gh-pages bases for deployment (#290) The PR branch was left over. More importantly, the file listed "main" instead of "master". --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Corrected small typo in documentation * Cleaner unit test output (#314) * Increment version number to 1.3.2.9006 * Capturing output of test unit * Dirichlet concentration parameter is now actually being used (#315) * forwarded psi argument to run_mcmc * Incremented version and updated news.md * ready for cran submission * CRAN wanted a trailing slash in the URL to the website, since it becomes added automatically if one follows the URL * Internalized a bunch of SMC functions and made families #312 * incrementing development versions * updating news.md * linting * fixed most of the thigns * incremented dev version * Fixed lint issues * removing tagging of Anja as author since she is listed in DESCRIPTION * lots of work in order to clean up compute_consensus * linting --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no>
osorensen
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Oct 12, 2023
* Removed duplicated output element (#291) * Removed duplicated output element * Updated package version and NEWS * Should fix #292 (#293) * Updated NEWS and increment version * Updated citation info in README * Should fix #299 (#300) * Should fix #299 * Added missing documentation objects and changed the name of one argument * Fixed another documentation issue * Removed deprecated SMC functions (#303) * Updated build version number * Increment version number to 1.3.2.9002 * Removed deprecated SMC functions (#301) * Updated NEWS (#301) * Logz issue 158 (#304) * Added exact partition function option * Updated tests * Updated SMC Mallows examples * Styling * More linting * Updated linter workflow Some linter were deprecated, ignored line on vignette needed update * Trying to please CodeFactor * Incremented version number and added entry to NEWS.md --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Added BugReport URL (#308) * Added URL for bug reports * Increment version number to 1.3.2.9004 * Small typo correction and documentation update * Website (#310) * Website * De-duplicating vignettes * Adding GH Action for pkgdown (#290) Literally the output of `usethis::use_github_action("pkgdown")` * Triggering `gh-pages` when pushing to PR #310 (tests) This is just for testing the online deployment and should be removed after merge (or just before). --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Small changes (#311) * Small changes * Fixed gh-pages bases for deployment (#290) The PR branch was left over. More importantly, the file listed "main" instead of "master". --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Corrected small typo in documentation * Cleaner unit test output (#314) * Increment version number to 1.3.2.9006 * Capturing output of test unit * Dirichlet concentration parameter is now actually being used (#315) * forwarded psi argument to run_mcmc * Incremented version and updated news.md * ready for cran submission * CRAN wanted a trailing slash in the URL to the website, since it becomes added automatically if one follows the URL * Internalized a bunch of SMC functions and made families #312 * incrementing development versions * updating news.md * linting * fixed most of the thigns * incremented dev version * Fixed lint issues * removing tagging of Anja as author since she is listed in DESCRIPTION * lots of work in order to clean up compute_consensus * linting * got rid of annoying row names in posterior interval dataframe * made a version with parallel chains that is actually working * close to a working version with parallel chains * first iteration * styling and updating style rules * attempt at refactoring * getting there * styling * fixing initial value hickup * styling * Parallel issue 307 (#320) * made a version with parallel chains that is actually working * close to a working version with parallel chains * first iteration * styling and updating style rules * attempt at refactoring * getting there * styling * fixing initial value hickup * styling --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no>
osorensen
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Oct 13, 2023
#324) * Removed duplicated output element (#291) * Removed duplicated output element * Updated package version and NEWS * Should fix #292 (#293) * Updated NEWS and increment version * Updated citation info in README * Should fix #299 (#300) * Should fix #299 * Added missing documentation objects and changed the name of one argument * Fixed another documentation issue * Removed deprecated SMC functions (#303) * Updated build version number * Increment version number to 1.3.2.9002 * Removed deprecated SMC functions (#301) * Updated NEWS (#301) * Logz issue 158 (#304) * Added exact partition function option * Updated tests * Updated SMC Mallows examples * Styling * More linting * Updated linter workflow Some linter were deprecated, ignored line on vignette needed update * Trying to please CodeFactor * Incremented version number and added entry to NEWS.md --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Added BugReport URL (#308) * Added URL for bug reports * Increment version number to 1.3.2.9004 * Small typo correction and documentation update * Website (#310) * Website * De-duplicating vignettes * Adding GH Action for pkgdown (#290) Literally the output of `usethis::use_github_action("pkgdown")` * Triggering `gh-pages` when pushing to PR #310 (tests) This is just for testing the online deployment and should be removed after merge (or just before). --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Small changes (#311) * Small changes * Fixed gh-pages bases for deployment (#290) The PR branch was left over. More importantly, the file listed "main" instead of "master". --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Corrected small typo in documentation * Cleaner unit test output (#314) * Increment version number to 1.3.2.9006 * Capturing output of test unit * Dirichlet concentration parameter is now actually being used (#315) * forwarded psi argument to run_mcmc * Incremented version and updated news.md * ready for cran submission * CRAN wanted a trailing slash in the URL to the website, since it becomes added automatically if one follows the URL * Internalized a bunch of SMC functions and made families #312 * incrementing development versions * updating news.md * linting * fixed most of the thigns * incremented dev version * Fixed lint issues * removing tagging of Anja as author since she is listed in DESCRIPTION * lots of work in order to clean up compute_consensus * linting * got rid of annoying row names in posterior interval dataframe * made a version with parallel chains that is actually working * close to a working version with parallel chains * first iteration * styling and updating style rules * attempt at refactoring * getting there * styling * fixing initial value hickup * styling * Parallel issue 307 (#320) * made a version with parallel chains that is actually working * close to a working version with parallel chains * first iteration * styling and updating style rules * attempt at refactoring * getting there * styling * fixing initial value hickup * styling * correcting typos in vignette --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no>
osorensen
added a commit
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Oct 20, 2023
* Removed duplicated output element (#291) * Removed duplicated output element * Updated package version and NEWS * Should fix #292 (#293) * Updated NEWS and increment version * Updated citation info in README * Should fix #299 (#300) * Should fix #299 * Added missing documentation objects and changed the name of one argument * Fixed another documentation issue * Removed deprecated SMC functions (#303) * Updated build version number * Increment version number to 1.3.2.9002 * Removed deprecated SMC functions (#301) * Updated NEWS (#301) * Logz issue 158 (#304) * Added exact partition function option * Updated tests * Updated SMC Mallows examples * Styling * More linting * Updated linter workflow Some linter were deprecated, ignored line on vignette needed update * Trying to please CodeFactor * Incremented version number and added entry to NEWS.md --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Added BugReport URL (#308) * Added URL for bug reports * Increment version number to 1.3.2.9004 * Small typo correction and documentation update * Website (#310) * Website * De-duplicating vignettes * Adding GH Action for pkgdown (#290) Literally the output of `usethis::use_github_action("pkgdown")` * Triggering `gh-pages` when pushing to PR #310 (tests) This is just for testing the online deployment and should be removed after merge (or just before). --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Small changes (#311) * Small changes * Fixed gh-pages bases for deployment (#290) The PR branch was left over. More importantly, the file listed "main" instead of "master". --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no> * Corrected small typo in documentation * Cleaner unit test output (#314) * Increment version number to 1.3.2.9006 * Capturing output of test unit * Dirichlet concentration parameter is now actually being used (#315) * forwarded psi argument to run_mcmc * Incremented version and updated news.md * ready for cran submission * CRAN wanted a trailing slash in the URL to the website, since it becomes added automatically if one follows the URL * Internalized a bunch of SMC functions and made families #312 * incrementing development versions * updating news.md * linting * fixed most of the thigns * incremented dev version * Fixed lint issues * removing tagging of Anja as author since she is listed in DESCRIPTION * lots of work in order to clean up compute_consensus * linting * got rid of annoying row names in posterior interval dataframe * made a version with parallel chains that is actually working * close to a working version with parallel chains * first iteration * styling and updating style rules * attempt at refactoring * getting there * styling * fixing initial value hickup * styling * Parallel issue 307 (#320) * made a version with parallel chains that is actually working * close to a working version with parallel chains * first iteration * styling and updating style rules * attempt at refactoring * getting there * styling * fixing initial value hickup * styling * correcting typos in vignette * Removed unused argument from augment_pairwise() #325 * Updated news * incremented version --------- Co-authored-by: Waldir Leoncio <w.l.netto@medisin.uio.no>
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This should fix #313.