Merge pull request #70 from abkfenris/julia-tutorial

Julia's tutorial

py-base/conda-linux-64.lock

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 524d906548a29041e55434347d2b89debfa2e3506deef00fa92de98daf81210a
+# input_hash: 73a1fd52890a92f967bc7d061910a6efeed97e5553a6440a21ca4a8b93aee663
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.7.22-hbcca054_0.conda#a73ecd2988327ad4c8f2c331482917f2
@@ -92,6 +92,7 @@ https://conda.anaconda.org/conda-forge/linux-64/rdma-core-28.9-h59595ed_1.conda#
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 https://conda.anaconda.org/conda-forge/linux-64/snappy-1.1.10-h9fff704_0.conda#e6d228cd0bb74a51dd18f5bfce0b4115
+https://conda.anaconda.org/bioconda/linux-64/sra-tools-2.9.6-hf484d3e_0.tar.bz2#010360b3ab732be603d3798b5d1bacc4
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@@ -178,7 +179,9 @@ https://conda.anaconda.org/conda-forge/linux-64/mpc-1.3.1-hfe3b2da_0.conda#289c7
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 https://conda.anaconda.org/conda-forge/linux-64/pandoc-3.1.3-h32600fe_0.conda#8287aeb8462e2d4b235eff788e75919d
+https://conda.anaconda.org/conda-forge/linux-64/pigz-2.6-h27826a3_0.tar.bz2#677798489006b14291e8617223e34348
 https://conda.anaconda.org/conda-forge/linux-64/python-3.9.16-h2782a2a_0_cpython.conda#95c9b7c96a7fd7342e0c9d0a917b8f78
+https://conda.anaconda.org/bioconda/linux-64/seqtk-1.4-he4a0461_1.tar.bz2#6171aed4c1ca97a5d34e3bcad7bee3f4
 https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.42.0-h2c6b66d_0.conda#1192f6ec654a5bc4ee1d64bdc4a3e5cc
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@@ -245,6 +248,7 @@ https://conda.anaconda.org/conda-forge/linux-64/gts-0.7.6-h977cf35_4.conda#4d8df
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+https://conda.anaconda.org/conda-forge/linux-64/humanfriendly-10.0-py39hf3d152e_4.tar.bz2#3844897723d78cca5f813ad6bee5fc7b
 https://conda.anaconda.org/conda-forge/noarch/hyperframe-6.0.1-pyhd8ed1ab_0.tar.bz2#9f765cbfab6870c8435b9eefecd7a1f4
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@@ -342,6 +346,7 @@ https://conda.anaconda.org/conda-forge/noarch/typing_utils-0.1.0-pyhd8ed1ab_0.ta
 https://conda.anaconda.org/conda-forge/noarch/uc-micro-py-1.0.1-pyhd8ed1ab_0.tar.bz2#3ddf6684d9b274a12c94e509ca45656c
 https://conda.anaconda.org/conda-forge/linux-64/unicodedata2-15.0.0-py39hb9d737c_0.tar.bz2#230d65004135bf312504a1bbcb0c7a08
 https://conda.anaconda.org/conda-forge/noarch/uri-template-1.3.0-pyhd8ed1ab_0.conda#0944dc65cb4a9b5b68522c3bb585d41c
+https://conda.anaconda.org/conda-forge/noarch/verboselogs-1.7-py_0.tar.bz2#ffce1c9059a29251d27b0075c41d83f3
 https://conda.anaconda.org/conda-forge/noarch/webcolors-1.13-pyhd8ed1ab_0.conda#166212fe82dad8735550030488a01d03
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@@ -372,10 +377,11 @@ https://conda.anaconda.org/conda-forge/linux-64/cairo-1.16.0-hbbf8b49_1016.conda
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-https://conda.anaconda.org/conda-forge/noarch/click-default-group-1.2.2-pyhd8ed1ab_1.tar.bz2#72a46ffc25701c173932fd55cf0965d3
+https://conda.anaconda.org/conda-forge/noarch/click-default-group-1.2.3-pyhd8ed1ab_0.conda#d541f74d40048cd24506d1730b67d147
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+https://conda.anaconda.org/conda-forge/noarch/coloredlogs-15.0.1-pyhd8ed1ab_3.tar.bz2#7b4fc18b7f66382257c45424eaf81935
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@@ -421,6 +427,7 @@ https://conda.anaconda.org/conda-forge/noarch/pexpect-4.8.0-pyh1a96a4e_2.tar.bz2
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 https://conda.anaconda.org/conda-forge/linux-64/proj-9.2.1-ha643af7_0.conda#e992387307f4403ba0ec07d009032550
+https://conda.anaconda.org/conda-forge/noarch/property-manager-3.0-py_0.tar.bz2#a6da492df105d85ec943b99db66c02b1
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@@ -459,6 +466,7 @@ https://conda.anaconda.org/conda-forge/linux-64/cf-units-3.2.0-py39h0f8d45d_0.co
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+https://conda.anaconda.org/conda-forge/noarch/executor-23.2-pyhd3deb0d_0.tar.bz2#01570739b18f4c62f040308cdd6318ef
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@@ -474,6 +482,7 @@ https://conda.anaconda.org/conda-forge/noarch/importlib-resources-6.0.0-pyhd8ed1
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+https://conda.anaconda.org/bioconda/linux-64/kaiju-1.9.2-h43eeafb_3.tar.bz2#af38a1c858610af80b81ba7fcaf8a5a1
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@@ -563,6 +572,7 @@ https://conda.anaconda.org/conda-forge/noarch/cdsapi-0.6.1-pyhd8ed1ab_0.conda#45
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+https://conda.anaconda.org/bioconda/noarch/fastq-dl-1.1.1-hdfd78af_0.tar.bz2#7db7ceb925d4fb3aa69da12d91fe298c
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py-base/environment.yml

@@ -1,6 +1,7 @@
 name: OHW-py
 channels:
   - conda-forge
+  - bioconda
 dependencies:
   # base
   - python=3.9
@@ -112,6 +113,13 @@ dependencies:
   # - xlrd  # deprecated, use openpyxl instead
   - zarr
   # Tutorial specific, may be dupes to make things explicit
+  - kaiju # 23-Julia
+  - scikit-learn # 23-Julia
+  - fastq-dl # 23-Julia
+  - seqtk # 23-Julia
+  - pandas # 23-Julia
+  - matplotlib-base # 23-Julia
+  - seaborn # 23-Julia
   - pandas # 23-Myranda
   - xarray # 23-Myranda
   - seaborn # 23-Myranda