update workflows

odelmarcelle · Apr 17, 2024 · 2cc5870 · 2cc5870
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diff --git a/.github/workflows/check-full.yaml → .github/workflows/R-CMD-check.yaml b/.github/workflows/check-full.yaml → .github/workflows/R-CMD-check.yaml
@@ -1,9 +1,5 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-#
-# NOTE: This workflow is overkill for most R packages and
-# check-standard.yaml is likely a better choice.
-# usethis::use_github_action("check-standard") will install it.
 on:
   push:
     branches: [main, master]
@@ -22,26 +18,18 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release'}
-
+          - {os: macos-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
-          # Use 3.6 to trigger usage of RTools35
-          - {os: windows-latest, r: '3.6'}
-
-          # Use older ubuntu to maximise backward compatibility
-          - {os: ubuntu-18.04,   r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-18.04,   r: 'release'}
-          - {os: ubuntu-18.04,   r: 'oldrel-1'}
-          - {os: ubuntu-18.04,   r: 'oldrel-2'}
-          - {os: ubuntu-18.04,   r: 'oldrel-3'}
-          - {os: ubuntu-18.04,   r: 'oldrel-4'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -53,14 +41,10 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: |
-            any::rcmdcheck
-            sentometrics=?ignore-before-r=3.6.0
-            stm=?ignore-before-r=3.6.0
-            topicmodels=?ignore-before-r=3.6.0
+          extra-packages: any::rcmdcheck
           needs: check
 
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
-
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -15,7 +15,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -27,5 +27,24 @@ jobs:
           needs: coverage
 
       - name: Test coverage
-        run: covr::codecov(quiet = FALSE)
-        shell: Rscript {0}
+        run: |
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package
diff --git a/README.Rmd b/README.Rmd
@@ -20,8 +20,8 @@ knitr::opts_chunk$set(
 
 <!-- badges: start -->
 [![CRAN Version](https://www.r-pkg.org/badges/version/sentopics)](https://CRAN.R-project.org/package=sentopics)
-[![R-CMD-check](https://github.com/odelmarcelle/sentopics/workflows/R-CMD-check/badge.svg)](https://github.com/odelmarcelle/sentopics/actions)
 [![Codecov test coverage](https://codecov.io/gh/odelmarcelle/sentopics/branch/master/graph/badge.svg?token=V6M82L4ZCX)](https://app.codecov.io/gh/odelmarcelle/sentopics)
+[![R-CMD-check](https://github.com/odelmarcelle/sentopics/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/odelmarcelle/sentopics/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 ## Installation

diff --git a/README.md b/README.md
@@ -7,9 +7,9 @@
 
 [![CRAN
 Version](https://www.r-pkg.org/badges/version/sentopics)](https://CRAN.R-project.org/package=sentopics)
-[![R-CMD-check](https://github.com/odelmarcelle/sentopics/workflows/R-CMD-check/badge.svg)](https://github.com/odelmarcelle/sentopics/actions)
 [![Codecov test
 coverage](https://codecov.io/gh/odelmarcelle/sentopics/branch/master/graph/badge.svg?token=V6M82L4ZCX)](https://app.codecov.io/gh/odelmarcelle/sentopics)
+[![R-CMD-check](https://github.com/odelmarcelle/sentopics/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/odelmarcelle/sentopics/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 ## Installation
@@ -84,13 +84,14 @@ head(lda$theta)
 #    1_6 0.006993007 0.9160839 0.076923077
 # The document-topic in a 'long' format & optionally with meta-data
 head(melt(lda, include_docvars = FALSE))
-#     topic .id        prob
-# 1: topic1 1_1 0.005780347
-# 2: topic1 1_2 0.004291845
-# 3: topic1 1_3 0.015873016
-# 4: topic1 1_4 0.009708738
-# 5: topic1 1_5 0.008849558
-# 6: topic1 1_6 0.006993007
+#     topic    .id        prob
+#    <fctr> <char>       <num>
+# 1: topic1    1_1 0.005780347
+# 2: topic1    1_2 0.004291845
+# 3: topic1    1_3 0.015873016
+# 4: topic1    1_4 0.009708738
+# 5: topic1    1_5 0.008849558
+# 6: topic1    1_6 0.006993007
 # The most probable words per topic
 topWords(lda, output = "matrix") 
 #       topic1        topic2              topic3           
@@ -123,13 +124,15 @@ sentiment.
 
 ``` r
 sentopics_date(lda)  |> head(2)
-#    .id      .date
-# 1: 1_1 1998-06-09
-# 2: 1_2 1998-06-09
+#       .id      .date
+#    <char>     <Date>
+# 1:    1_1 1998-06-09
+# 2:    1_2 1998-06-09
 sentopics_sentiment(lda) |> head(2)
-#    .id  .sentiment
-# 1: 1_1 -0.01470588
-# 2: 1_2 -0.02500000
+#       .id  .sentiment
+#    <char>       <num>
+# 1:    1_1 -0.01470588
+# 2:    1_2 -0.02500000
 proportion_topics(lda, period = "month") |> head(2)
 #                topic1    topic2     topic3
 # 1998-06-01 0.04004786 0.9100265 0.04992568