Get the image collection.

ohsu-qin · Jul 12, 2017 · 154fa5a · 154fa5a
1 parent 8d12128
commit 154fa5a
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/qipipe/pipeline/qipipeline.py b/qipipe/pipeline/qipipeline.py
@@ -915,7 +915,8 @@ def _collect_roi_files(collection, scan_input):
     _logger = logger(__name__)
     roi_dirs = scan_input.roi
     if roi_dirs:
-        scan_pats = collection.patterns.scan[scan_input.scan]
+        img_coll = image_collection.with_name(coll_opt)
+        scan_pats = img_coll.patterns.scan[scan_input.scan]
         if not scan_pats:
             raise PipelineError("Scan patterns were not found"
                                 " for %s %s scan %d" % (