Merge branch 'master' into RELEASE_3_17

olapuentesantana · May 26, 2023 · 2b9be58 · 2b9be58
2 parents 6b5abf1 + 4be6fc8
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: easier
 Title: Estimate Systems Immune Response from RNA-seq data
-Version: 1.6.2
+Version: 1.7.0
 Authors@R: 
     c(
         person(

diff --git a/vignettes/easier_user_manual.Rmd b/vignettes/easier_user_manual.Rmd
@@ -269,6 +269,9 @@ More detailed information on how these networks were obtained can be found in th
 ```{r, eval=TRUE}
 lrpair_weights <- compute_LR_pairs(RNA_tpm = RNA_tpm,
                                    cancer_type = "pancan")
+# Remove LR which are not found (NA's)
+na_lrpairs <- names(lrpair_weights)[is.na(apply(lrpair_weights, 2, sum))]
+lrpair_weights <- lrpair_weights[, -which(colnames(lrpair_weights) %in% na_lrpairs)]
 head(lrpair_weights[,1:5])
 ```