Study cases for the Diplôme Universitaire en Bioinformatique Intégrative (DU-Bii)

Description

Preparation of the study cases used for the different courses of the Diplôme Universitaire en Bioinformatique Intégrative (DU-Bii) organised by the Université Paris-Diderot and the Institut Français de Bioinformatique (IFB).

This includes:

• a description of the study cases;
• links to the reference publications and data sources;
• scripts enabling to download the data from its original sources;
• optionally, some small demo datasets derived from the raw data, in order to facilitate its use for the different courses of the diploma (Python, Unix, statistics with R, ...).

Beware: this repository should by no means not contain any massive data like the raw read files or mass spectrometry profiles.

Table of contents

Escherichia coli

• Genomewide landscape of gene–metabolome associations: mutations + metabolome

• Bacterial regulons: ChIP-seq + RNA-seq

Arabidopsis thaliana

Homo sapiens

Access

• Github: https://github.com/DU-Bii/study-cases
• Web: https://du-bii.github.io/study-cases/

Installation

Contributors (members of the teaching team)

git clone git@github.com:DU-Bii/study-cases.git

Other people

git clone https://github.com/DU-Bii/study-cases.git

Credits

• Jacques van Helden Jacques.van-Helden@univ-amu.fr
• Fabien Jourdan
• ... (to be updated)

License

This content is released under the Creative Commons Attribution-ShareAlike 4.0 (CC BY-SA 4.0) license. See the bundled LICENSE file for details.

Ce contenu est mis à disposition selon les termes de la licence Creative Commons Attribution - Partage dans les Mêmes Conditions 4.0 International (CC BY-SA 4.0). Consultez le fichier LICENSE pour plus de détails.