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setup.py
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setup.py
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# Copyright (C) 2022 The Jackson Laboratory
# Copyright (C) 2015-2018 University of Dundee & Open Microscopy Environment.
# All rights reserved.
#
# Use is subject to license terms supplied in LICENSE.
import os
import sys
from setuptools import setup
from setuptools.command.test import test as test_command
with open("README.md", "r") as fh:
long_description = fh.read()
class PyTest(test_command):
user_options = [
('test-path=', 't', "base dir for test collection"),
('test-ice-config=', 'i',
"use specified 'ice config' file instead of default"),
('test-pythonpath=', 'p', "prepend 'pythonpath' to PYTHONPATH"),
('test-marker=', 'm', "only run tests including 'marker'"),
('test-no-capture', 's', "don't suppress test output"),
('test-failfast', 'x', "Exit on first error"),
('test-verbose', 'v', "more verbose output"),
('test-quiet', 'q', "less verbose output"),
('junitxml=', None, "create junit-xml style report file at 'path'"),
('pdb', None, "fallback to pdb on error"),
]
def initialize_options(self):
test_command.initialize_options(self)
self.test_pythonpath = None
self.test_string = None
self.test_marker = None
self.test_path = 'test'
self.test_failfast = False
self.test_quiet = False
self.test_verbose = False
self.test_no_capture = False
self.junitxml = None
self.pdb = False
self.test_ice_config = None
def finalize_options(self):
test_command.finalize_options(self)
self.test_args = [self.test_path]
if self.test_string is not None:
self.test_args.extend(['-k', self.test_string])
if self.test_marker is not None:
self.test_args.extend(['-m', self.test_marker])
if self.test_failfast:
self.test_args.extend(['-x'])
if self.test_verbose:
self.test_args.extend(['-v'])
if self.test_quiet:
self.test_args.extend(['-q'])
if self.junitxml is not None:
self.test_args.extend(['--junitxml', self.junitxml])
if self.pdb:
self.test_args.extend(['--pdb'])
self.test_suite = True
if 'ICE_CONFIG' not in os.environ:
os.environ['ICE_CONFIG'] = self.test_ice_config
def run_tests(self):
if self.test_pythonpath is not None:
sys.path.insert(0, self.test_pythonpath)
# import here, cause outside the eggs aren't loaded
import pytest
errno = pytest.main(self.test_args)
sys.exit(errno)
def read(fname):
"""
Utility function to read the README file.
:rtype : String
"""
return open(os.path.join(os.path.dirname(__file__), fname)).read()
setup(
packages=['', 'omero.plugins'],
package_dir={"": "src"},
name="omero-cli-transfer",
version='1.1.0',
maintainer="Erick Ratamero",
maintainer_email="erick.ratamero@jax.org",
description=("A set of utilities for exporting a transfer"
" packet from an OMERO server and importing "
"it in a different server. Developed by the "
"Research IT team at The Jackson Laboratory."),
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/TheJacksonLaboratory/omero-cli-transfer",
install_requires=[
'ezomero>=2.1.0, <3.0.0',
'ome-types==0.5.1.post1'
],
extras_require={
"rocrate": ["rocrate==0.7.0"],
},
python_requires='>=3.8',
cmdclass={'test': PyTest},
tests_require=['pytest', 'restview', 'mox3'],
)