Open Microscopy Environment

Repositories

• omero-guide-upload
  4 0 1 1 Updated Mar 8, 2021

• omero-guide-r
  Jupyter Notebook 5 0 0 1 Updated Mar 8, 2021

• omero-guide-fiji
  Jupyter Notebook 6 0 0 1 Updated Mar 8, 2021

• omero-web

  Django-based OMERO.web client

  python client django web omero
  Python 14 2 74 (4 issues need help) 12 Updated Mar 8, 2021

• omero-guide-introduction
  5 0 1 2 Updated Mar 8, 2021

• omero-docs-superbuild

  OMERO build for doc components

  docs build omero meta-repo
  1 0 0 0 Updated Mar 8, 2021

• omero-py

  Python project containing Ice remoting code for OMERO

  python component lib omero
  Python GPL-2.0 18 7 49 12 Updated Mar 5, 2021

• omero-scripts

  Core OMERO Scripts

  python scripts omero
  Python 20 9 10 5 Updated Mar 5, 2021

• ome-documentation

  Sphinx-based documentation for the Open Microscopy Environment

  documentation omero ome
  Python 46 17 20 2 Updated Mar 5, 2021

• omero-metadata

  OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/

  cli metadata omero
  Python GPL-2.0 10 2 16 2 Updated Mar 5, 2021

• training-notebooks Archived

  A set of Python Notebooks to demonstrate how to access the images and metadata from OMERO
  Jupyter Notebook 9 2 2 2 Updated Mar 5, 2021

• bio-formats-build

  Bio-Formats top-level build for all components

  build bio-formats meta-repo
  Shell 10 0 1 0 Updated Mar 5, 2021

• omeroweb-install
  HTML 7 1 2 1 Updated Mar 4, 2021

• bioformats

  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  java metadata image format-reader format-converter bio-formats life-sciences-image
  Java GPL-2.0 205 256 112 19 Updated Mar 4, 2021

• openmicroscopy

  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …

  python java image database server omero
  Java GPL-2.0 96 149 20 9 Updated Mar 4, 2021

• omero-python-superbuild

  OMERO build for Python server components

  python build omero meta-repo
  3 0 1 0 Updated Mar 4, 2021

• ngff-latency-benchmark
  Jupyter Notebook 6 2 3 1 Updated Mar 3, 2021

• omero-guide-python
  Jupyter Notebook 7 3 0 2 Updated Mar 3, 2021

• www.openmicroscopy.org

  OME main website

  jekyll-site ome
  HTML CC-BY-4.0 22 4 4 2 Updated Mar 3, 2021

• meeting-minutes

  Minutes from the weekly OME community meetings
  4 0 0 0 Updated Mar 2, 2021

• omero-matlab

  Toolbox for accessing OMERO from MATLAB

  matlab toolbox omero
  MATLAB 6 0 5 0 Updated Mar 2, 2021

• omero-insight

  Gradle project containing insight java client for OMERO

  java client gui omero
  Java GPL-2.0 11 4 37 2 Updated Mar 1, 2021

• omero-guide-cellprofiler

  guide cellprofiler omero
  Jupyter Notebook 3 1 0 0 Updated Mar 1, 2021

• omero-guides

  Guides for using OMERO

  docs help omero guides manuals
  Python 4 0 8 2 Updated Mar 1, 2021

• omero-plugins

  Collection of OMERO extensions (plugins, apps)

  ecosystem build plugins omero meta-repo
  8 0 1 0 Updated Mar 1, 2021

• ngff

  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-science cloud spec bioimaging file-formats
  HTML 5 11 23 1 Updated Feb 28, 2021

• omero-gallery

  webapp omero
  JavaScript AGPL-3.0 11 3 19 4 Updated Feb 26, 2021

• omero-cli-duplicate

  OMERO command-line tool for duplicating database objects

  python plugin cli command omero
  Python GPL-2.0 7 1 2 2 Updated Feb 25, 2021

• omero-figure

  An OMERO.web app for creating Figures from images in OMERO

  webapp omero
  JavaScript AGPL-3.0 24 13 36 2 Updated Feb 25, 2021

• omero-mapr

  An OMERO.web app allowing to browse the data through attributes linked to the image

  plugin image viewer omero
  Python AGPL-3.0 10 4 14 2 Updated Feb 25, 2021