acquisition.ome.xml

<?xml version="1.0" encoding="UTF-8"?>
<!--
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# 
# Copyright 2006-2017 University of Dundee. All rights reserved.
# Use is subject to license terms supplied in LICENSE.txt
#
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-->
<types>
<!-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
		Acquisition Context 1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-->
	<type id="ome.model.core.Image" named="true" described="true" annotated="true"><!-- TODO: review-->
		<properties>
                        <!-- make required when can default to 0 -->
			<optional name="series" type="NonNegativeInteger"/>
			<!-- Acquisition Context 1 -->
			<optional name="acquisitionDate" type="timestamp"/>
			<optional name="archived" type="boolean"/>
			<optional name="partial" type="boolean"/>
			<optional name="format" type="ome.model.enums.Format"/>
			<!-- Note: in the model acquisitionDate is called creationDate but the DB already has a creation date for the object -->
			<optional name="imagingEnvironment" type="ome.model.acquisition.ImagingEnvironment"/>
			<!-- Note: objectiveSettings maps to ObjectiveRef (ID and values) in model-->
			<optional name="objectiveSettings" type="ome.model.acquisition.ObjectiveSettings"/>
			<optional name="instrument" type="ome.model.acquisition.Instrument"/>
			<!-- Note: instrument is called InstrumentRef (ID only ref) in model-->
			<optional name="stageLabel" type="ome.model.acquisition.StageLabel"/>
			<optional name="experiment" type="ome.model.experiment.Experiment"/>
			<!-- Note: experiment is called ExperimentRef (ID only ref) in model-->
			<!-- Note: acquiredPixels is missing, and OMERO uses the pixels[0] as defaultPixels -->
			<onemany name="pixels" type="ome.model.core.Pixels" inverse="image" ordered="true"/>
			<zeromany name="wellSamples" type="ome.model.screen.WellSample" inverse="image"/>
			<zeromany name="rois" type="ome.model.roi.Roi" inverse="image"/>
			<!-- Containers -->
			<parent name="datasetLinks" type="ome.model.containers.DatasetImageLink" target="ome.model.containers.Dataset"/>
			<parent name="folderLinks" type="ome.model.containers.FolderImageLink" target="ome.model.containers.Folder"/>
			<optional name="fileset" type="ome.model.fs.Fileset"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.ObjectiveSettings">
		<!-- Note: ObjectiveSettings are stored in ObjectiveRef in model-->
		<properties>
			<optional name="correctionCollar" type="double"/>
			<optional name="medium" type="ome.model.enums.Medium"/>
			<optional name="refractiveIndex" type="double"/>
			<required name="objective" type="ome.model.acquisition.Objective"/>
			<!-- Note: the objective link used ID in model-->
		</properties>
	</type>
	<type id="ome.model.core.Pixels">
		<properties>
			<!-- Acquisition Context 1 -->
			<manyone name="image" type="ome.model.core.Image" ordered="true"/>
			<!-- Warning: relatedTo is DEPRECATED and may be removed in OMERO 6.0. -->
			<optional name="relatedTo" type="ome.model.core.Pixels" deprecated="true"/>
			<!-- Note: relatedTo is not used in model-->
			<required name="pixelsType" type="ome.model.enums.PixelsType"/>
			<!-- Note: pixelsType is called PixelType in model and uses enum PixelTypes -->
			<optional name="significantBits" type="PositiveInteger"/>
			<required name="sizeX" type="PositiveInteger"/>
			<required name="sizeY" type="PositiveInteger"/>
			<required name="sizeZ" type="PositiveInteger"/>
			<required name="sizeC" type="PositiveInteger"/>
			<required name="sizeT" type="PositiveInteger"/>
			<required name="sha1" type="string"/>
			<required name="dimensionOrder" type="ome.model.enums.DimensionOrder"/>
			<optional name="physicalSizeX" type="ome.model.units.Length"/>
			<optional name="physicalSizeY" type="ome.model.units.Length"/>
			<optional name="physicalSizeZ" type="ome.model.units.Length"/>
			<optional name="waveStart" type="int"/>
			<optional name="waveIncrement" type="int"/>
			<optional name="timeIncrement" type="ome.model.units.Time"/>
			<optional name="methodology" type="string"/>
			<!-- Note: planeInfo is called Plane in model and is zeromany -->
			<onemany name="planeInfo" type="ome.model.core.PlaneInfo" inverse="pixels"/>
			<!-- TODO: storage -->
			<parent name="pixelsFileMaps" type="ome.model.core.PixelsOriginalFileMap" target="ome.model.core.OriginalFile"/>
			<!-- Acquisition Context 2 -->
			<onemany name="channels" type="ome.model.core.Channel" inverse="pixels" ordered="true"/>
			<!--Display Settings 1-->
			<zeromany name="settings" type="ome.model.display.RenderingDef" inverse="pixels"/>
			<zeromany name="thumbnails" type="ome.model.display.Thumbnail" inverse="pixels"/>
		</properties>
	</type>
	<link id="ome.model.core.PixelsOriginalFileMap">
		<properties>
			<from_parent type="ome.model.core.OriginalFile"/>
			<to_child type="ome.model.core.Pixels"/>
		</properties>
	</link>
	<type id="ome.model.core.OriginalFile" named="true" annotated="true">
		<properties>
			<child name="pixelsFileMaps" type="ome.model.core.PixelsOriginalFileMap" target="ome.model.core.Pixels"/>
			<!--
			 path is the directory to the logical location of this file, i.e. `dirname <file>`
			 name is the filename of the file, i.e. `basename <file>`
			-->
			<required name="path" type="text"/>
			<optional name="repo" type="string"/>  <!-- length 36 -->
			<optional name="size" type="long"/>
			<optional name="atime" type="timestamp"/>
			<optional name="mtime" type="timestamp"/>
			<optional name="ctime" type="timestamp"/>
			<optional name="hasher" type="ome.model.enums.ChecksumAlgorithm"/>
			<optional name="hash" type="text"/>
			<optional name="mimetype" type="string"/>
			<zeromany name="filesetEntries" type="ome.model.fs.FilesetEntry" inverse="originalFile"/>
			<!--
			Has a default set at the DB level of application/octet-stream.
			Internal values in use are:
			 * Repository
			 * Directory
			 * OMERO.tables
			-->
		</properties>
	</type>

	<type id="ome.model.core.PlaneInfo" annotated="true">
		<!-- Note: PlaneInfo is called Plane in model-->
		<properties>
			<manyone name="pixels" type="ome.model.core.Pixels"/>
			<required name="theZ" type="NonNegativeInteger"/>
			<required name="theC" type="NonNegativeInteger"/>
			<required name="theT" type="NonNegativeInteger"/>
			<optional name="deltaT" type="ome.model.units.Time"/>
			<!-- Note: deltaT is stored in PlaneTiming in model-->
			<optional name="positionX" type="ome.model.units.Length"/>
			<!-- Note: positionX is stored in StagePosition in model-->
			<optional name="positionY" type="ome.model.units.Length"/>
			<!-- Note: positionY is stored in StagePosition in model-->
			<optional name="positionZ" type="ome.model.units.Length"/>
			<!-- Note: positionZ is stored in StagePosition in model-->
			<optional name="exposureTime" type="ome.model.units.Time"/>
			<!-- Note: exposureTime is stored in PlaneTiming in model-->
			<!-- TODO: see mac notes -->
		</properties>
	</type>
	<type id="ome.model.experiment.Experiment" described="true">
		<properties>
			<required name="type" type="ome.model.enums.ExperimentType"/>
			<zeromany name="microbeamManipulation" type="ome.model.experiment.MicrobeamManipulation" inverse="experiment"/>
			<!-- Note: called MicrobeamManipulationRef (ID only Ref) in model-->
			<!-- Note: ExperimenterRef is not needed as all DB objects have a owner and group from model-->
		</properties>
	</type>
	<type id="ome.model.experiment.MicrobeamManipulation" described="true">
		<properties>
			<!-- Note: Experimenter is not needed as all DB objects have a owner and group from model-->
			<required name="type" type="ome.model.enums.MicrobeamManipulationType"/>
			<!-- Disabling for the moment since roi's are not used
			<onemany name="roi" type="ome.model.display.Roi" inverse="microbeamManipulation"/>
			-->
			<!-- Note: roi is called ROIRef (ID only Ref) in model-->
			<zeromany name="lightSourceSettings" type="ome.model.acquisition.LightSettings" inverse="microbeamManipulation"/>
			<!-- Note: lightSourceSettings is called LightSourceRef (ID and values) in model-->
			<manyone name="experiment" type="ome.model.experiment.Experiment"/>
			<!-- Note: experiment is not in model-->
		</properties>
	</type>
	<type id="ome.model.acquisition.StageLabel" named="true">
		<properties>
			<optional name="positionX" type="ome.model.units.Length"/>
			<!-- Note: positionX is called X in model-->
			<optional name="positionY" type="ome.model.units.Length"/>
			<!-- Note: positionY is called Y in model-->
			<optional name="positionZ" type="ome.model.units.Length"/>
			<!-- Note: positionZ is called Z in model-->
		</properties>
	</type>
	<type id="ome.model.acquisition.ImagingEnvironment">
		<properties>
			<optional name="temperature" type="ome.model.units.Temperature"/>
			<optional name="airPressure" type="ome.model.units.Pressure"/>
			<optional name="humidity" type="PercentFraction"/>
			<optional name="co2percent" type="PercentFraction"/>
			<map name="map" type="string"/>
		</properties>
	</type>
<!-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
			Acquisition Context 2
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
-->
	<type id="ome.model.core.Channel" annotated="true">
		<!-- Note: Channel is not in model-->
		<properties>
			<optional name="statsInfo" type="ome.model.stats.StatsInfo"/><!-- Note: statsInfo is not in model-->
			<optional name="red" type="int"/>
			<optional name="green" type="int"/>
			<optional name="blue" type="int"/>
			<optional name="alpha" type="int"/>
			<optional name="lookupTable" type="text"/>
			<manyone name="logicalChannel" type="ome.model.core.LogicalChannel" inverse="channels"/>
			<manyone name="pixels" type="ome.model.core.Pixels" ordered="true"/>
		</properties>
	</type>
	<type id="ome.model.core.LogicalChannel">
		<properties>
			<optional name="name" type="text"/>
			<optional name="pinHoleSize" type="ome.model.units.Length"/>
			<optional name="illumination" type="ome.model.enums.Illumination"/>
			<!-- Note: illumination is called IlluminationType in model-->
			<optional name="contrastMethod" type="ome.model.enums.ContrastMethod"/>
			<optional name="excitationWave" type="ome.model.units.Length"/>
			<!-- Note: excitationWave is called exWave in model-->
			<optional name="emissionWave" type="ome.model.units.Length"/>
			<!-- Note: emissionWave is called emWave in model-->
			<optional name="fluor" type="string"/>
			<optional name="ndFilter" type="double"/>
			<optional name="otf" type="ome.model.acquisition.OTF"/>
			<!-- Note: oft is called OTFRef (ID only Ref) in model-->
			<optional name="detectorSettings" type="ome.model.acquisition.DetectorSettings"/>
			<!-- Note: detectorSettings is called DetectorRef (ID and values) in model-->
			<optional name="lightSourceSettings" type="ome.model.acquisition.LightSettings"/>
			<!-- Note: lightSourceSettings is called LightSourceRef (ID and values) in model-->
			<optional name="filterSet" type="ome.model.acquisition.FilterSet"/>
			<!-- Note: filterSet is called FilterSetRef (ID only Ref) in model-->
			<optional name="samplesPerPixel" type="PositiveInteger"/>
			<optional name="photometricInterpretation" type="ome.model.enums.PhotometricInterpretation"/>
			<optional name="mode" type="ome.model.enums.AcquisitionMode"/>
			<optional name="pockelCellSetting" type="int"/>
			<onemany name="channels" type="ome.model.core.Channel" inverse="logicalChannel"/>
			<optional name="lightPath" type="ome.model.acquisition.LightPath"/>
		</properties>
	</type>
	<type id="ome.model.stats.StatsInfo">
		<!-- Note: StatsInfo is not in model-->
		<properties>
			<required name="globalMin" type="double"/>
			<required name="globalMax" type="double"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.DetectorSettings">
		<!-- Note: DetectorSettings are stored in DetectorRef in model-->
		<properties>
			<optional name="voltage" type="ome.model.units.ElectricPotential"/>
			<optional name="gain" type="double"/>
			<optional name="offsetValue" type="double"/>
			<!-- Note: offsetValue is called Offset in model-->
			<optional name="readOutRate" type="ome.model.units.Frequency"/>
			<optional name="binning" type="ome.model.enums.Binning"/>
			<optional name="integration" type="PositiveInteger"/>
			<optional name="zoom" type="double"/>
			<required name="detector" type="ome.model.acquisition.Detector"/>
			<!-- Note: detector is ID in model-->
		</properties>
	</type>
	<type id="ome.model.acquisition.OTF">
		<properties>
			<required name="sizeX" type="PositiveInteger"/>
			<required name="sizeY" type="PositiveInteger"/>
			<required name="opticalAxisAveraged" type="boolean"/>
			<required name="pixelsType" type="ome.model.enums.PixelsType"/>
			<!-- Note: pixelsType is called PixelType and using ExtendedPixelTypes in model-->
			<required name="path" type="string"/><!-- TODO: no FK? -->
			<!-- Note: path is not in model-->
			<!-- Note: BinaryFile is in model but not used in the DB  -->
			<optional name="filterSet" type="ome.model.acquisition.FilterSet"/>
			<required name="objective" type="ome.model.acquisition.Objective"/>
			<manyone name="instrument" type="ome.model.acquisition.Instrument"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.LightSettings">
		<!-- Note: LightSettings are stored in LightSourceRef in model-->
		<properties>
			<optional name="attenuation" type="PercentFraction"/>
			<optional name="wavelength" type="ome.model.units.Length"/>
			<required name="lightSource" type="ome.model.acquisition.LightSource"/>
			<!-- Note: lightSource is ID in model-->
			<manyzero name="microbeamManipulation" type="ome.model.experiment.MicrobeamManipulation"/>
		</properties>
	</type>
<!-- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
			Acquisition Context 3
	   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
	<abstract id="ome.model.acquisition.LightSource" manufactured="true" annotated="true">
		<properties>
			<optional name="manufacturer" type="string"/>
			<optional name="model" type="string"/>
			<optional name="power" type="ome.model.units.Power"/>
			<optional name="lotNumber" type="string"/>
			<optional name="serialNumber" type="string"/>
			<manyone name="instrument" type="ome.model.acquisition.Instrument"/>
		</properties>
	</abstract>
	<type id="ome.model.acquisition.Arc" superclass="ome.model.acquisition.LightSource">
		<properties>
			<required name="type" type="ome.model.enums.ArcType"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.Filament" superclass="ome.model.acquisition.LightSource">
		<properties>
			<required name="type" type="ome.model.enums.FilamentType"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.Laser" superclass="ome.model.acquisition.LightSource">
		<properties>
			<required name="type" type="ome.model.enums.LaserType"/>
			<required name="laserMedium" type="ome.model.enums.LaserMedium"/>
			<!-- Note: laserMedium uses enum LaserMedia in model-->
			<optional name="frequencyMultiplication" type="PositiveInteger"/>
			<optional name="tuneable" type="boolean"/>
			<optional name="pulse" type="ome.model.enums.Pulse"/>
			<optional name="wavelength" type="ome.model.units.Length"/>
			<optional name="pockelCell" type="boolean"/>
			<optional name="pump" type="ome.model.acquisition.LightSource"/>
			<optional name="repetitionRate" type="ome.model.units.Frequency"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.LightEmittingDiode" superclass="ome.model.acquisition.LightSource">
		<properties>
		</properties>
	</type>
	<type id="ome.model.acquisition.GenericExcitationSource" superclass="ome.model.acquisition.LightSource">
		<properties>
			<map name="map" type="string"/>
		</properties>
	</type>
<!-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
			Acquisition Context 4
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
-->
	<type id="ome.model.acquisition.Detector" manufactured="true" annotated="true">
		<properties>
			<optional name="manufacturer" type="string"/>
			<optional name="model" type="string"/>
			<optional name="lotNumber" type="string"/>
			<optional name="serialNumber" type="string"/>
			<optional name="voltage" type="ome.model.units.ElectricPotential"/>
			<optional name="gain" type="double"/>
			<optional name="offsetValue" type="double"/>
			<!-- Note: offsetValue is called Offset in model-->
			<optional name="zoom" type="double"/>
			<optional name="amplificationGain" type="double"/>
			<required name="type" type="ome.model.enums.DetectorType"/>
			<manyone name="instrument" type="ome.model.acquisition.Instrument"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.Microscope" manufactured="true">
		<properties>
			<optional name="manufacturer" type="string"/>
			<optional name="model" type="string"/>
			<optional name="lotNumber" type="string"/>
			<optional name="serialNumber" type="string"/>
			<required name="type" type="ome.model.enums.MicroscopeType"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.Objective" manufactured="true" annotated="true">
		<properties>
			<optional name="manufacturer" type="string"/>
			<optional name="model" type="string"/>
			<optional name="lotNumber" type="string"/>
			<optional name="serialNumber" type="string"/>
			<optional name="nominalMagnification" type="double"/>
			<optional name="calibratedMagnification" type="double"/>
			<optional name="lensNA" type="double"/>
			<required name="immersion" type="ome.model.enums.Immersion"/>
			<required name="correction" type="ome.model.enums.Correction"/>
			<optional name="workingDistance" type="ome.model.units.Length"/>
			<optional name="iris" type="boolean"/>
			<manyone name="instrument" type="ome.model.acquisition.Instrument"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.Instrument" annotated="true">
		<properties>
			<optional name="microscope" type="ome.model.acquisition.Microscope"/>
			<zeromany name="detector" type="ome.model.acquisition.Detector" inverse="instrument"/>
			<zeromany name="objective" type="ome.model.acquisition.Objective" inverse="instrument"/>
			<zeromany name="lightSource" type="ome.model.acquisition.LightSource" inverse="instrument"/>
			<zeromany name="filter" type="ome.model.acquisition.Filter" inverse="instrument"/>
			<zeromany name="dichroic" type="ome.model.acquisition.Dichroic" inverse="instrument"/>
			<zeromany name="filterSet" type="ome.model.acquisition.FilterSet" inverse="instrument"/>
			<zeromany name="otf" type="ome.model.acquisition.OTF" inverse="instrument"/>
		</properties>
	</type>
<!-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
			Acquisition Context 5
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
-->
	<type id="ome.model.acquisition.Filter" annotated="true">
		<properties>
			<optional name="manufacturer" type="string"/>
			<optional name="model" type="string"/>
			<optional name="lotNumber" type="string"/>
			<optional name="serialNumber" type="string"/>
			<optional name="filterWheel" type="string"/>
			<optional name="type" type="ome.model.enums.FilterType"/>
			<optional name="transmittanceRange" type="ome.model.acquisition.TransmittanceRange"/>
			<manyone name="instrument" type="ome.model.acquisition.Instrument"/>
			<parent name="excitationFilterLink" type="ome.model.acquisition.FilterSetExcitationFilterLink" target="ome.model.acquisition.FilterSet"/>
			<parent name="emissionFilterLink" type="ome.model.acquisition.FilterSetEmissionFilterLink" target="ome.model.acquisition.FilterSet"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.FilterSet" manufactured="true">
		<properties>
			<optional name="manufacturer" type="string"/>
			<optional name="model" type="string"/>
			<optional name="lotNumber" type="string"/>
			<optional name="serialNumber" type="string"/>
			<manyone name="instrument" type="ome.model.acquisition.Instrument"/>
			<child name="excitationFilterLink" type="ome.model.acquisition.FilterSetExcitationFilterLink" target="ome.model.acquisition.Filter"/>
			<optional name="dichroic" type="ome.model.acquisition.Dichroic"/>
			<child name="emissionFilterLink" type="ome.model.acquisition.FilterSetEmissionFilterLink" target="ome.model.acquisition.Filter"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.Dichroic" annotated="true">
		<properties>
			<optional name="manufacturer" type="string"/>
			<optional name="model" type="string"/>
			<optional name="lotNumber" type="string"/>
			<optional name="serialNumber" type="string"/>
			<manyone name="instrument" type="ome.model.acquisition.Instrument"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.TransmittanceRange">
		<properties>
			<optional name="cutIn" type="ome.model.units.Length"/>
			<optional name="cutOut" type="ome.model.units.Length"/>
			<optional name="cutInTolerance" type="ome.model.units.Length"/>
			<optional name="cutOutTolerance" type="ome.model.units.Length"/>
			<optional name="transmittance" type="PercentFraction"/>
		</properties>
	</type>
	<type id="ome.model.acquisition.LightPath" annotated="true">
		<properties>
			<child name="excitationFilterLink" type="ome.model.acquisition.LightPathExcitationFilterLink" target="ome.model.acquisition.Filter" ordered="true"/>
			<optional name="dichroic" type="ome.model.acquisition.Dichroic"/>
			<child name="emissionFilterLink" type="ome.model.acquisition.LightPathEmissionFilterLink" target="ome.model.acquisition.Filter"/>
		</properties>
	</type>
	<link id="ome.model.acquisition.LightPathExcitationFilterLink">
		<properties>
			<from_parent type="ome.model.acquisition.LightPath" ordered="true"/>
			<to_child type="ome.model.acquisition.Filter"/>
		</properties>
	</link>
	<link id="ome.model.acquisition.LightPathEmissionFilterLink">
		<properties>
			<from_parent type="ome.model.acquisition.LightPath"/>
			<to_child type="ome.model.acquisition.Filter"/>
		</properties>
	</link>
	<link id="ome.model.acquisition.FilterSetExcitationFilterLink">
		<properties>
			<from_parent type="ome.model.acquisition.FilterSet"/>
			<to_child type="ome.model.acquisition.Filter"/>
		</properties>
	</link>
	<link id="ome.model.acquisition.FilterSetEmissionFilterLink">
		<properties>
			<from_parent type="ome.model.acquisition.FilterSet"/>
			<to_child type="ome.model.acquisition.Filter"/>
		</properties>
	</link>
<!-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
			Acquisition Context 1 Enumerations 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
-->
<!-- ExperimentType -->
	<enum id="ome.model.enums.ExperimentType">
		<entry name="FP"/>
		<entry name="FRET"/>
		<entry name="TimeLapse"/>
		<entry name="FourDPlus"/>
		<entry name="Screen"/>
		<entry name="Immunocytochemistry"/>
		<entry name="Immunofluorescence"/>
		<entry name="FISH"/>
		<entry name="Electrophysiology"/>
		<entry name="IonImaging"/>
		<entry name="Colocalization"/>
		<entry name="PGIDocumentation"/>
		<entry name="FluorescenceLifetime"/>
		<entry name="SpectralImaging"/>
		<entry name="Photobleaching"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
	<enum id="ome.model.enums.MicrobeamManipulationType">
		<entry name="FRAP"/>
		<entry name="Photoablation"/>
		<entry name="Photoactivation"/>
		<entry name="Uncaging"/>
		<entry name="OpticalTrapping"/>
		<entry name="FLIP"/>
		<entry name="InverseFRAP"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
<!-- Objective Settings Entity -->
	<enum id="ome.model.enums.Medium">
		<entry name="Air"/>
		<entry name="Oil"/>
		<entry name="Water"/>
		<entry name="Glycerol"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
<!-- Microscope Entity -->
	<enum id="ome.model.enums.MicroscopeType">
		<entry name="Upright"/>
		<entry name="Inverted"/>
		<entry name="Dissection"/>
		<entry name="Electrophysiology"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
<!-- Object Entity -->
	<enum id="ome.model.enums.Immersion">
		<entry name="Oil"/>
		<entry name="Water"/>
		<entry name="WaterDipping"/>
		<entry name="Air"/>
		<entry name="Multi"/>
		<entry name="Glycerol"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
	
	<enum id="ome.model.enums.Correction">
		<entry name="UV"/>
		<entry name="PlanApo"/>
		<entry name="PlanFluor"/>
		<entry name="SuperFluor"/>
		<entry name="VioletCorrected"/>
		<entry name="Achro"/>
		<entry name="Achromat"/>
		<entry name="Fluor"/>
		<entry name="Fl"/>
		<entry name="Fluar"/>
		<entry name="Neofluar"/>
		<entry name="Fluotar"/>
		<entry name="Apo"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>

<!-- OriginalFile Entity -->
	<enum id="ome.model.enums.Format">
		<!-- Note: Format is not in model but used by OriginalFile-->
		<!-- Note: On server startup the DBEnumCheck class adds the formats as determined from the current Bio-Formats -->
		<!-- Note: Other and Unknown are not needed use text/plain or application/octet-stream -->
	</enum>
	<enum id="ome.model.enums.ChecksumAlgorithm">
		<!-- names suffixed by bit width for clarity -->
		<!-- these are listed in both etc/omero.properties and
		     ome-documentation/omero/sysadmins/fs-upload-configuration.txt -->
		<entry name="Adler-32"/>
		<entry name="CRC-32"/>
		<entry name="MD5-128"/>
		<entry name="Murmur3-32"/>
		<entry name="Murmur3-128"/>
		<entry name="SHA1-160"/>
		<entry name="File-Size-64"/>
	</enum>
<!-- Pixels Entity -->
	<enum id="ome.model.enums.DimensionOrder">
		<entry name="XYZCT"/>
		<entry name="XYZTC"/>
		<entry name="XYCTZ"/>
		<entry name="XYCZT"/>
		<entry name="XYTCZ"/>
		<entry name="XYTZC"/>
		<!-- Note: Other and Unknown are not available -->
	</enum>
	<enum id="ome.model.enums.PixelsType">
		<!-- Note: a combination of the objects PixelTypes and
		     ExtendedPixelTypes from the model -->
		<entry name="bit"/>
		<entry name="int8"/>
		<entry name="int16"/>
		<entry name="int32"/>
		<entry name="uint8"/>
		<entry name="uint16"/>
		<entry name="uint32"/>
		<entry name="float"/>
		<entry name="double"/>
		<entry name="complex"/>
		<entry name="double-complex"/>
		<optional name="bitSize" type="int"/>
	</enum>
<!--
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	Acquisition Context 2 Enumerations
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-->
<!-- AcquisitionContext Entity -->
	<enum id="ome.model.enums.PhotometricInterpretation">
		<entry name="RGB"/>
		<entry name="ARGB"/>
		<entry name="CMYK"/>
		<entry name="HSV"/>
		<entry name="Monochrome"/>
		<entry name="ColorMap"/>
		<!-- Note: Other and Unknown are not available -->
	</enum>
<!-- Channel Entity -->
	<enum id="ome.model.enums.AcquisitionMode">
		<entry name="WideField"/>
		<entry name="LaserScanningConfocalMicroscopy"/>
		<entry name="SpinningDiskConfocal"/>
		<entry name="SlitScanConfocal"/>
		<entry name="MultiPhotonMicroscopy"/>
		<entry name="StructuredIllumination"/>
		<entry name="SingleMoleculeImaging"/>
		<entry name="TotalInternalReflection"/>
		<entry name="FluorescenceLifetime"/>
		<entry name="SpectralImaging"/>
		<entry name="FluorescenceCorrelationSpectroscopy"/>
		<entry name="NearFieldScanningOpticalMicroscopy"/>
		<entry name="SecondHarmonicGenerationImaging"/>
		<entry name="PALM"/>
		<entry name="STORM"/>
		<entry name="STED"/>
		<entry name="TIRF"/>
		<entry name="FSM"/>
		<entry name="LCM"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
		<entry name="BrightField"/>
		<entry name="SweptFieldConfocal"/>
		<entry name="SPIM"/>
	</enum>
<!-- Detector Settings Entity -->
	<enum id="ome.model.enums.Binning">
		<entry name="1x1"/>
		<entry name="2x2"/>
		<entry name="4x4"/>
		<entry name="8x8"/>
		<!-- Note: Other and Unknown are not available -->
	</enum>
<!-- Detector Entity -->
	<enum id="ome.model.enums.DetectorType">
		<entry name="CCD"/>
		<entry name="IntensifiedCCD"/>
		<entry name="AnalogVideo"/>
		<entry name="PMT"/>
		<entry name="Photodiode"/>
		<entry name="Spectroscopy"/>
		<entry name="LifetimeImaging"/>
		<entry name="CorrelationSpectroscopy"/>
		<entry name="FTIR"/>
		<entry name="EM-CCD"/>
		<entry name="APD"/>
		<entry name="CMOS"/>
		<entry name="EBCCD"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
<!-- Illumination Entity -->
	<enum id="ome.model.enums.Illumination">
		<entry name="Transmitted"/>
		<entry name="Epifluorescence"/>
		<entry name="Oblique"/>
		<entry name="NonLinear"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
	<enum id="ome.model.enums.ContrastMethod">
		<entry name="Brightfield"/>
		<entry name="Phase"/>
		<entry name="DIC"/>
		<entry name="HoffmanModulation"/>
		<entry name="ObliqueIllumination"/>
		<entry name="PolarizedLight"/>
		<entry name="Darkfield"/>
		<entry name="Fluorescence"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
<!-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	Acquisition Context 3 Enumerations 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
-->
<!-- Arc Entity -->
	<enum id="ome.model.enums.ArcType">
		<entry name="Hg"/>
		<entry name="Xe"/>
		<entry name="HgXe"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
<!-- Filament Entity -->
	<enum id="ome.model.enums.FilamentType">
		<entry name="Incandescent"/>
		<entry name="Halogen"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
<!-- Laser Entity -->
	<enum id="ome.model.enums.LaserMedium">
		<!-- Note: LaserMedium is called LaserMedia in model-->
<!-- Dye Laser Medium -->
		<entry name="Rhodamine6G"/>
		<entry name="CoumarinC30"/>
<!-- Eximer Laser Medium -->
		<entry name="ArFl"/>
		<entry name="ArCl"/>
		<entry name="KrFl"/>
		<entry name="KrCl"/>
		<entry name="XeFl"/>
		<entry name="XeCl"/>
		<entry name="XeBr"/>
<!-- Semi Conductor Laser Medium -->
		<entry name="GaAs"/>
		<entry name="GaAlAs"/>
<!-- Free Electron Laser Medium -->
		<entry name="EMinus"/>
<!-- Metal Vapor Laser Medium -->
		<entry name="Cu"/>
		<entry name="Ag"/>
<!-- Gas Laser Medium -->
		<entry name="N"/>
		<entry name="Ar"/>
		<entry name="Kr"/>
		<entry name="Xe"/>
		<entry name="HeNe"/>
		<entry name="HeCd"/>
		<entry name="CO"/>
		<entry name="CO2"/>
		<entry name="H2O"/>
		<entry name="HFl"/>
<!-- add Solid State Medium -->
		<entry name="NdGlass"/>
		<entry name="NdYAG"/>
		<entry name="ErGlass"/>
		<entry name="ErYAG"/>
		<entry name="HoYLF"/>
		<entry name="HoYAG"/>
		<entry name="Ruby"/>
		<entry name="TiSapphire"/>
		<entry name="Alexandrite"/>
<!-- Unknown Laser Medium -->
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
	<enum id="ome.model.enums.LaserType">
		<entry name="Excimer"/>
		<entry name="Gas"/>
		<entry name="MetalVapor"/>
		<entry name="SolidState"/>
		<entry name="Dye"/>
		<entry name="Semiconductor"/>
		<entry name="FreeElectron"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
	<enum id="ome.model.enums.Pulse">
		<entry name="CW"/>
		<entry name="Single"/>
		<entry name="QSwitched"/>
		<entry name="Repetitive"/>
		<entry name="ModeLocked"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
<!-- in the model FrequencyMultiplication is a positive integer -->
<!-- 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	Acquisition Context 5 Enumerations 
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
-->
	<enum id="ome.model.enums.FilterType">
		<entry name="LongPass"/>
		<entry name="ShortPass"/>
		<entry name="BandPass"/>
		<entry name="MultiPass"/>
		<entry name="Dichroic"/>
		<entry name="NeutralDensity"/>
		<entry name="Tuneable"/>
		<entry name="Other"/>
		<entry name="Unknown"/>
	</enum>
</types>