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omnideconv

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  1. immunedeconv immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    R 428 101

  2. omnideconv omnideconv Public

    Unified access to several second-generation deconvolution methods

    HTML 48 10

  3. spacedeconv spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    R 24 5

  4. SimBu SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    R 12 1

  5. deconvExplorer deconvExplorer Public

    R 3 1

  6. omnideconv.github.io omnideconv.github.io Public

    CSS 2

Repositories

Showing 10 of 18 repositories
  • omnideconv Public

    Unified access to several second-generation deconvolution methods

    omnideconv/omnideconv’s past year of commit activity
    HTML 48 GPL-3.0 10 14 (1 issue needs help) 0 Updated Jul 24, 2024
  • methylDeconv Public

    Runs and compares different methylation based cell type deconvolution algorithms

    omnideconv/methylDeconv’s past year of commit activity
    R 1 0 0 1 Updated Jul 19, 2024
  • deconvExplorer Public
    omnideconv/deconvExplorer’s past year of commit activity
    R 3 1 5 2 Updated Jun 12, 2024
  • scaden Public Forked from KevinMenden/scaden

    Deep Learning based cell composition analysis with Scaden.

    omnideconv/scaden’s past year of commit activity
    Python 0 MIT 26 0 0 Updated Jun 7, 2024
  • spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    omnideconv/spacedeconv’s past year of commit activity
    R 24 GPL-3.0 5 1 3 Updated May 23, 2024
  • SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    omnideconv/SimBu’s past year of commit activity
    R 12 GPL-3.0 1 5 2 Updated May 6, 2024
  • immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    omnideconv/immunedeconv’s past year of commit activity
    R 428 101 28 (1 issue needs help) 3 Updated May 6, 2024
  • CDSeq Public Forked from PelzKo/CDSeq

    CDSeq R package patched and maintained to be used in the omnideconv installation

    omnideconv/CDSeq’s past year of commit activity
    R 0 11 0 0 Updated Mar 29, 2024
  • bseqsc Public Forked from shenorrLabTRDF/bseqsc

    Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline

    omnideconv/bseqsc’s past year of commit activity
    R 0 15 0 0 Updated Mar 28, 2024
  • BayesPrism Public Forked from Danko-Lab/BayesPrism
    omnideconv/BayesPrism’s past year of commit activity
    HTML 0 44 0 0 Updated Mar 28, 2024
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