Popular repositories
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immunedeconv
immunedeconv PublicA unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
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omnideconv
omnideconv PublicUnified access to several second-generation deconvolution methods
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spacedeconv
spacedeconv PublicA unified interface to spatial transcriptomics deconvolution tools
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Repositories
- deconvExplorer Public
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- immunedeconv Public
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
- CDSeq Public Forked from PelzKo/CDSeq
CDSeq R package patched and maintained to be used in the omnideconv installation
- bseqsc Public Forked from shenorrLabTRDF/bseqsc
Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
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- omnideconv.github.io Public
- methylDeconv Public
Runs and compares different methylation based cell type deconvolution algorithms
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