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README.md
create_openSNP_cohort.bash

README.md

Create an up to date OpenSNP community cohort from genome wide genotyping data available on the OpenSNP platform

Dependency

The tools rely on a couple of dependencies.
The versions mentioned were the one used on the last successful run

Dependencies in ./bin:

Dependencies in ./ref are:

Set the dependencies correctly:

  • Make a link on each of the tool or put the tools directly in the ./bin and ./ref directories
  • OR Edit the script to specify the location of the tools (less recommended)

Set the number of cores to use

  • Edit the script to set the number of cores available by changing the value of variable nb_proc (default is 4)