feat: add initial Workflow object model

src/v11_wf.rs

@@ -1,10 +1,172 @@
 use serde::{Deserialize, Serialize};
 use serde_with::skip_serializing_none;
+use serde_yaml::Value as YValue;
+
+type Map<T> = std::collections::HashMap<String, T>;
 
 #[skip_serializing_none]
 #[serde(rename_all = "camelCase")]
 #[derive(Clone, Debug, Deserialize, Serialize)]
 pub struct Workflow {
-    cwl_version: String,
     class: String,
+
+    cwl_version: String,
+
+    doc: Option<WorkflowDoc>,
+
+    hints: Option<YValue>,
+
+    id: Option<String>,
+
+    inputs: WorkflowInputs,
+
+    label: Option<String>,
+
+    outputs: WorkflowOutputs,
+
+    steps: WorkflowSteps,
+
+    requirements: Option<YValue>,
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum WorkflowDoc {
+    Doc(String),
+    Array(Vec<String>),
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum WorkflowInputs {
+    Array(Vec<WorkflowInputParameter>),
+    Map(Map<WorkflowInputParameter>),
+    Types(Map<String>)
+}
+
+#[skip_serializing_none]
+#[serde(rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub struct WorkflowInputParameter {
+    #[serde(rename = "type")]
+    param_type: YValue,
+
+    label: Option<String>,
+
+    secondary_files: WorkflowSecondaryFiles,
+
+    streamable: Option<bool>,
+
+    default: Option<YValue>,
+
+    doc: Option<WorkflowDoc>,
+
+    id: Option<String>,
+
+    input_binding: Option<WorkflowInputBinding>,
+
+    format: Option<WorkflowParameterFormat>,
+
+    load_contents: Option<bool>,
+
+    load_listing: Option<String>,
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum WorkflowOutputs {
+    Array(Vec<WorkflowOutputParameter>),
+    Map(Map<WorkflowOutputParameter>),
+    Types(Map<YValue>)
+}
+
+#[skip_serializing_none]
+#[serde(rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub struct WorkflowOutputParameter {
+    #[serde(rename = "type")]
+    param_type: YValue,
+
+    label: Option<String>,
+
+    secondary_files: WorkflowSecondaryFiles,
+
+    streamable: Option<bool>,
+
+    default: Option<YValue>,
+
+    doc: Option<WorkflowDoc>,
+
+    id: Option<String>,
+
+    format: Option<WorkflowParameterFormat>,
+
+    output_source: Option<WorkflowOutputSource>,
+
+    link_merge: Option<String>,
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum WorkflowSteps {
+    Array(Vec<WorkflowStep>),
+    Map(Map<WorkflowStep>),
+}
+
+#[skip_serializing_none]
+#[serde(rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub struct WorkflowStep {
+
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum WorkflowSecondaryFiles {
+    SecondaryFile(SecondaryFileSchema),
+    Array(Vec<SecondaryFileSchema>),
+}
+
+#[skip_serializing_none]
+#[serde(rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub struct SecondaryFileSchema {
+    pub pattern: SecondaryFileSchemaPattern,
+    pub required: Option<SecondaryFileSchemaRequired>
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum SecondaryFileSchemaPattern {
+    Pattern(String),
+    Expression(YValue)
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum SecondaryFileSchemaRequired {
+    Required(bool),
+    Expression(YValue)
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum WorkflowParameterFormat {
+    Format(String),
+    Array(Vec<String>),
+    Expression(YValue),
+}
+
+#[skip_serializing_none]
+#[serde(rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub struct WorkflowInputBinding {
+    pub load_contents: Option<bool>
+}
+
+#[serde(untagged, rename_all = "camelCase")]
+#[derive(Clone, Debug, Deserialize, Serialize)]
+pub enum WorkflowOutputSource {
+    OutputSource(String),
+    Array(Vec<String>)
 }