Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[Feature] Add BioMedical3DPad #2383

Merged
merged 32 commits into from
Jan 3, 2023
Merged

Conversation

suyanzhou626
Copy link
Contributor

Thanks for your contribution and we appreciate it a lot. The following instructions would make your pull request more healthy and more easily get feedback. If you do not understand some items, don't worry, just make the pull request and seek help from maintainers.

Motivation

Add the 3d pad transform for biomedical images, which follows the design of the nnUNet.

@codecov
Copy link

codecov bot commented Dec 6, 2022

Codecov Report

Base: 83.42% // Head: 83.41% // Decreases project coverage by -0.01% ⚠️

Coverage data is based on head (4f6b220) compared to base (3ca690b).
Patch coverage: 87.50% of modified lines in pull request are covered.

❗ Current head 4f6b220 differs from pull request most recent head 134fe96. Consider uploading reports for the commit 134fe96 to get more accurate results

Additional details and impacted files
@@             Coverage Diff             @@
##           dev-1.x    #2383      +/-   ##
===========================================
- Coverage    83.42%   83.41%   -0.02%     
===========================================
  Files          144      144              
  Lines         8356     8375      +19     
  Branches      1246     1249       +3     
===========================================
+ Hits          6971     6986      +15     
- Misses        1179     1183       +4     
  Partials       206      206              
Flag Coverage Δ
unittests 83.41% <87.50%> (-0.02%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
mmseg/datasets/transforms/transforms.py 91.02% <86.84%> (-0.11%) ⬇️
mmseg/datasets/__init__.py 100.00% <100.00%> (ø)
mmseg/datasets/transforms/__init__.py 100.00% <100.00%> (ø)
mmseg/structures/seg_data_sample.py 90.00% <0.00%> (-3.11%) ⬇️
mmseg/datasets/dataset_wrappers.py 47.45% <0.00%> (-1.73%) ⬇️
mmseg/models/segmentors/base.py 89.23% <0.00%> (-0.92%) ⬇️
mmseg/evaluation/metrics/iou_metric.py 77.17% <0.00%> (-0.25%) ⬇️

Help us with your feedback. Take ten seconds to tell us how you rate us. Have a feature suggestion? Share it here.

☔ View full report at Codecov.
📢 Do you have feedback about the report comment? Let us know in this issue.

mmseg/datasets/transforms/transforms.py Outdated Show resolved Hide resolved
mmseg/datasets/transforms/transforms.py Outdated Show resolved Hide resolved
mmseg/datasets/transforms/transforms.py Show resolved Hide resolved
mmseg/datasets/transforms/transforms.py Outdated Show resolved Hide resolved
mmseg/datasets/transforms/transforms.py Outdated Show resolved Hide resolved
mmseg/datasets/transforms/transforms.py Outdated Show resolved Hide resolved
MeowZheng and others added 10 commits December 6, 2022 20:36
CodeCamp open-mmlab#144 [Doc] Chinese version of config tutorial
Co-authored-by: 谢昕辰 <xiexinch@outlook.com>
CodeCamp open-mmlab#147 [Doc] Add Chinese version of train & test tutorial
Co-authored-by: 谢昕辰 <xiexinch@outlook.com>
Co-authored-by: 谢昕辰 <xiexinch@outlook.com>
CodeCamp open-mmlab#1562 [Doc] Add Chinese version of `overview.md`
@MeowZheng MeowZheng added the High Priority from Community This issue/pr needs more attention and higher priority than default developing plan label Jan 3, 2023
@MeowZheng MeowZheng merged commit 6af2b8e into open-mmlab:dev-1.x Jan 3, 2023
aravind-h-v pushed a commit to aravind-h-v/mmsegmentation that referenced this pull request Mar 27, 2023
aravind-h-v pushed a commit to aravind-h-v/mmsegmentation that referenced this pull request Mar 27, 2023
…ab#2384)

Revert "[Pix2Pix0] Add utility function to get edit vector (open-mmlab#2383)"

This reverts commit 857c04c.
nahidnazifi87 pushed a commit to nahidnazifi87/mmsegmentation_playground that referenced this pull request Apr 5, 2024
## Motivation
Add the 3d pad transform for biomedical images, which follows the design
of the nnUNet.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
High Priority from Community This issue/pr needs more attention and higher priority than default developing plan medical
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

6 participants