Connected Brain Regions (SMT-Neurophysiology)

SMT-Neurophysiology is a web-based tool to find connectivity between a given set of brain regions. Specifically, this tool uses a Steiner Minimal Tree approximation algorithm to find the best connections between the brain regions.

Installing SMT-Neurophysiology

Please do the following steps to install the SMT-Neurophysiology in your workspace:

• git clone https://github.com/dewancse/connected-brain-regions.git
• Open index.html home page in the browser

SMT-Neurophysiology workflow

This tool consists of two panel: left panel shows some brain regions and right panel visualizes a given set of brain regions. The user will select some brain regions of interest on the left panel and the right panel will show the connectivity of the selected brain regions.

Accessibility

The application is accessible by navigating::

  https://dewancse.github.io/connected-brain-regions/index.html

Programming Language

• JavaScript

Limitations

We will implement Unit testing and Functional testing to make sure the code is functioning as expected.

List of contributors

• Dewan Sarwar

Acknowledgements

This project is supported by the MedTech Centre of Research Excellence (MedTech CoRE), the Aotearoa Foundation, and the Auckland Bioengineering Institute.