Improve the search results.

open-prophetdb · Mar 31, 2024 · 5813639 · 5813639
1 parent 5a0bc8f
commit 5813639
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Showing 5 changed files with 16 additions and 11 deletions.
diff --git a/src/api/route.rs b/src/api/route.rs
@@ -255,7 +255,7 @@ impl BiomedgpsApi {
                     "id ASC".to_string()
                 } else {
                     // More fields will cause bad performance
-                    make_order_clause_by_pairs(pairs, 2)
+                    make_order_clause_by_pairs(pairs, 1)
                 }
             }
             None => "id ASC".to_string(),

diff --git a/src/bin/biomedgps-cli.rs b/src/bin/biomedgps-cli.rs
@@ -164,7 +164,7 @@ pub struct CacheTableArguments {
     #[structopt(name = "table", short = "t", long = "table")]
     table: String,
 
-    /// [Optional] Relation types for compound-disease-symptom table. Separated by comma. e.g. STRING::BINDING::Gene:Gene,STRING::BINDING::Gene:Gene. The number and order of relation types should be consistent with the pairs of table name. e.g. compound-disease-symptom table should have two relation types for compound-disease and disease-symptom.
+    /// [Optional] Relation types for compound-disease-symptom table. Separated by comma. e.g. DRUGBANK::treats::Compound:Disease,HSDN::has_symptom:Disease:Symptom. The number and order of relation types should be consistent with the pairs of table name. e.g. compound-disease-symptom table should have two relation types for compound-disease and disease-symptom.
     #[structopt(name = "relation_types", short = "r", long = "relation-types")]
     relation_types: Option<String>,
 

diff --git a/studio/src/pages/Home/index.less b/studio/src/pages/Home/index.less
@@ -16,7 +16,7 @@
     overflow: scroll;
 
     .header {
-      height: 30%;
+      height: 40%;
       width: 100%;
       display: flex;
       flex-direction: column;
@@ -35,7 +35,7 @@
 
     .text-statistics {
       display: flex;
-      padding: 0 40px;
+      padding: 0 6%;
       flex-direction: row;
       width: 100%;
 
@@ -77,6 +77,7 @@
     }
 
     .statistics {
+      height: 50%;
       padding: 0 60px;
 
       .data-stat {

diff --git a/studio/src/pages/Home/index.tsx b/studio/src/pages/Home/index.tsx
@@ -93,17 +93,19 @@ export const fetchNodes = async (
     // If the value is a number, then maybe it is an id or xref but not for name or synonyms.
     if (value && !isNaN(Number(value))) {
         queryMap = { id: value, xrefs: value };
-        order = ['label', 'id', 'xrefs'];
+        order = ['id', 'xrefs', 'label'];
     } else {
         queryMap = { name: value, synonyms: value, xrefs: value, id: value };
-        order = ['label', 'name', 'synonyms', 'xrefs', 'id'];
+        order = ['name', 'synonyms', 'xrefs', 'id', 'label'];
     }
 
     const fetchData = () => {
         fetchEntities({
             query_str: makeQueryEntityStr(queryMap, order),
             page: 1,
             page_size: 50,
+            // We only want to get all valid entities.
+            model_table_prefix: 'biomedgps',
         })
             .then((response) => {
                 const { records } = response;
@@ -291,7 +293,7 @@ const HomePage: React.FC = () => {
                     >
                         {nodeOptions &&
                             nodeOptions.map((option: any) => (
-                                <Select.Option key={option.label} value={option.value} disabled={option.disabled} onMouseEnter={() => {
+                                <Select.Option key={option.value} value={option.value} disabled={option.disabled} onMouseEnter={() => {
                                     console.log('hover:', option);
                                     setCurrentNodeOption(option.value);
                                 }} onMouseLeave={() => {
@@ -351,9 +353,11 @@ const HomePage: React.FC = () => {
                             <Tag color={guessColor("Symptom")}>Symptom | Fatigue</Tag>
                         </a>
                     </span>
+                    <span style={{ textAlign: 'center', color: 'red', fontWeight: 'bold' }}>NOTE: If you cannot find the node you are looking for, this may be due to the lack of knowledges in the current version of the platform.<br /> Please give us feedback or check the <a href="https://drugs.3steps.cn/#/about">About</a> page for more information.</span>
                 </Col>
                 <Row className="statistics" gutter={16}>
-                    <Col className="data-stat" sm={24} md={12} xs={12} xxl={12}>
+                    <Col sm={0} md={1} xs={1} xxl={1}></Col>
+                    <Col className="data-stat" sm={24} md={10} xs={10} xxl={10}>
                         <p className="desc" style={{ textAlign: 'justify' }}>
                             A platform with biomedical knowledge graph and graph neural network for drug repurposing and disease mechanism.
                             <br />
@@ -367,8 +371,8 @@ const HomePage: React.FC = () => {
                             More resources about the platform can be found in the <a href="https://drugs.3steps.cn/#/about">About</a> page.
                         </p>
                     </Col>
-                    <Col sm={0} md={1} xs={1} xxl={1}></Col>
-                    <Col className="image-container" sm={24} md={11} xs={11} xxl={11}>
+                    <Col sm={0} md={2} xs={2} xxl={2}></Col>
+                    <Col className="image-container" sm={24} md={10} xs={10} xxl={10}>
                         <Carousel autoPlay dynamicHeight={false} infiniteLoop showThumbs={false}>
                             {images.map((item: ImageItem) => {
                                 return (
@@ -380,6 +384,7 @@ const HomePage: React.FC = () => {
                             })}
                         </Carousel>
                     </Col>
+                    <Col sm={0} md={1} xs={1} xxl={1}></Col>
                 </Row>
                 <Row className="text-statistics">
                     {stats.map((item) => {

diff --git a/studio/src/pages/ModelConfig/index.tsx b/studio/src/pages/ModelConfig/index.tsx
@@ -3,7 +3,6 @@ import { Layout, Menu, Form, Input, InputNumber, Button, Select, Empty, Col, Row
 import { DotChartOutlined, DribbbleOutlined, AimOutlined, BranchesOutlined, BugOutlined, ZoomInOutlined } from '@ant-design/icons';
 import { history } from 'umi';
 // import { createFromIconfontCN } from '@ant-design/icons';
-import { useAuth0 } from "@auth0/auth0-react";
 import { GraphTable } from 'biominer-components';
 import { makeDataSources, pushGraphDataToLocalStorage } from 'biominer-components/dist/KnowledgeGraph/utils';
 import { APIs, GraphData, COMPOSED_ENTITY_DELIMITER, Entity } from 'biominer-components/dist/typings';