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bioframe

Bioframe is a library to enable flexible and scalable operations on genomic interval dataframes in python. Building bioframe directly on top of pandas enables immediate access to a rich set of dataframe operations. Working in python enables rapid visualization and iteration of genomic analyses.

guide-quickstart guide-intervalops.md guide-io.ipynb guide-performance.ipynb guide-recipes.md guide-definitions guide-specifications guide-bedtools

tutorials/tutorial_assign_motifs_to_peaks.ipynb tutorials/tutorial_assign_peaks_to_genes.ipynb

api-construction api-validation api-intervalops api-fileops api-resources api-extras api-vis api-lowlevel.md

Indices and tables

  • genindex
  • modindex
  • search