Open Chromosome Collective

Pinned

1. cooler Public

   A cool place to store your Hi-C

   Python 153 48

2. cooltools Public

   The tools for your .cool's

   Jupyter Notebook 99 40

3. distiller-nf Public

   A modular Hi-C mapping pipeline

   Groovy 68 24

4. pairtools Public

   CLI tools to process mapped Hi-C data

   Python 65 27

5. bioframe Public

   Pandas utilities for tab-delimited and other genomic data files

   Python 107 15

6. polychrom Public

   Polymer simulations of chromosomes and generating "in silico" Hi-C maps

   Python 35 14