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  1. cooler Public

    A cool place to store your Hi-C

    Python 153 48

  2. cooltools Public

    The tools for your .cool's

    Jupyter Notebook 99 40

  3. A modular Hi-C mapping pipeline

    Groovy 68 24

  4. pairtools Public

    CLI tools to process mapped Hi-C data

    Python 65 27

  5. bioframe Public

    Pandas utilities for tab-delimited and other genomic data files

    Python 107 15

  6. polychrom Public

    Polymer simulations of chromosomes and generating "in silico" Hi-C maps

    Python 35 14


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