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Update instance.py
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Lyuba Zehl committed Jul 20, 2023
1 parent 096c040 commit 64cbb4b
Showing 1 changed file with 26 additions and 15 deletions.
41 changes: 26 additions & 15 deletions pipeline/instance.py
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Original file line number Diff line number Diff line change
Expand Up @@ -150,14 +150,11 @@ def _build_single_version_link(self, versionReference:Dict, versions:Dict, title
link = os.path.join(self.readthedocs_url, self.version, "libraries", subdir, page)
return f"`{name} <{link}>`_" if name != vname else f"{name} \(TODO\)"

def _build_multi_version_links(self, versionReferenceList:Dict, versions:Dict, title:str, indent:int) -> str:
def _build_multi_version_links(self, versionReferenceList:Dict, versions:Dict, title:str, reversed=True) -> str:
linklist = []
for versionReference in versionReferenceList:
linklist.append(self._build_single_version_link(versionReference, versions, title))
reversed_linklist = list(reversed(sorted(linklist)))
ml_prefix = "\\n" + " "*indent + "| "
reversed_linklist_str = ml_prefix.join(reversed_linklist)
return f"| {reversed_linklist_str}"
return list(reversed(sorted(linklist))) if reversed else sorted(linklist)

def _build_terminology(self, target_file:str, title:str, data_to_display:Dict):
with open(f"{target_file}.rst", "w") as output_file:
Expand Down Expand Up @@ -306,8 +303,12 @@ def _build_brain_atlas(self, target_file:str, title:str, data_to_display:Dict):
doc.field(name="howToCite", value=d_citation, indent=field_list_indent)
if "hasVersion" in data and data["hasVersion"]:
field_name = "has versions"
version_link_list = self._build_multi_version_links(data["hasVersion"], data_to_display["versions"], title, indent=len(field_name)+field_list_indent)
doc.field(name=field_name, value=version_link_list, indent=field_list_indent)
multiline_indent = len(field_name)+3+field_list_indent
version_link_list = self._build_multi_version_links(data["hasVersion"], data_to_display["versions"], title)
doc.field(name=field_name, value=f"| {version_link_list[0]}", indent=field_list_indent)
if len(version_link_list) > 1:
for link in version_link_list[1:]:
doc.content(f"| {link}", indent=multiline_indent)
doc.newline()
doc.heading(f"Terminology", char="#")
if "parcellation_entities" in data_to_display and data_to_display["parcellation_entities"]:
Expand Down Expand Up @@ -335,8 +336,12 @@ def _build_brain_atlas(self, target_file:str, title:str, data_to_display:Dict):
doc.field(name="previous version", value=old_version_link, indent=field_list_indent)
if "isAlternativeVersionOf" in vdata and vdata["isAlternativeVersionOf"]:
field_name = "alternative versions"
alt_version_link_list = self._build_multi_version_links(vdata["isAlternativeVersionOf"], data_to_display["versions"], title, indent=len(field_name)+field_list_indent)
doc.field(name=field_name, value=alt_version_link_list, indent=field_list_indent)
multiline_indent = len(field_name)+3+field_list_indent
alt_version_link_list = self._build_multi_version_links(vdata["isAlternativeVersionOf"], data_to_display["versions"], title)
doc.field(name=field_name, value=alt_version_link_list[0], indent=field_list_indent)
if len(alt_version_link_list) > 1:
for link in alt_version_link_list[1:]:
doc.content(f"| {link}", indent=multiline_indent)
dv_fullName = vdata["fullName"] if "fullName" in vdata and vdata["fullName"] else "\-"
if dv_fullName != d_fullName:
doc.field(name="full name", value=dv_fullName, indent=field_list_indent)
Expand Down Expand Up @@ -386,8 +391,12 @@ def _build_common_coordinate_space(self, target_file:str, title:str, data_to_dis
doc.field(name="howToCite", value=d_citation, indent=field_list_indent)
if "hasVersion" in data and data["hasVersion"]:
field_name = "has versions"
version_link_list = self._build_multi_version_links(data["hasVersion"], data_to_display["versions"], title, indent=len(field_name)+field_list_indent)
doc.field(name=field_name, value=version_link_list, indent=field_list_indent)
multiline_indent = len(field_name)+3+field_list_indent
version_link_list = self._build_multi_version_links(data["hasVersion"], data_to_display["versions"], title)
doc.field(name=field_name, value=f"| {version_link_list[0]}", indent=field_list_indent)
if len(version_link_list) > 1:
for link in version_link_list[1:]:
doc.content(f"| {link}", indent=multiline_indent)
doc.newline()
doc.content("------------")
doc.newline()
Expand All @@ -404,12 +413,14 @@ def _build_common_coordinate_space(self, target_file:str, title:str, data_to_dis
if "isNewVersionOf" in vdata and vdata["isNewVersionOf"]:
old_version_link = self._build_single_version_link(vdata["isNewVersionOf"], data_to_display["versions"], title)
doc.field(name="previous version", value=old_version_link, indent=field_list_indent)
doc.newline()
if "isAlternativeVersionOf" in vdata and vdata["isAlternativeVersionOf"]:
field_name = "alternative versions"
alt_version_link_list = self._build_multi_version_links(vdata["isAlternativeVersionOf"], data_to_display["versions"], title, indent=len(field_name)+field_list_indent)
doc.field(name=field_name, value=alt_version_link_list, indent=field_list_indent)
doc.newline()
multiline_indent = len(field_name)+3+field_list_indent
alt_version_link_list = self._build_multi_version_links(vdata["isAlternativeVersionOf"], data_to_display["versions"], title)
doc.field(name=field_name, value=alt_version_link_list[0], indent=field_list_indent)
if len(alt_version_link_list) > 1:
for link in alt_version_link_list[1:]:
doc.content(f"| {link}", indent=multiline_indent)
dv_fullName = vdata["fullName"] if "fullName" in vdata and vdata["fullName"] else "\-"
if dv_fullName != d_fullName:
doc.field(name="full name", value=dv_fullName, indent=field_list_indent)
Expand Down

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