application issue

[ShixiangWang]

@all 大家逐一检查下相关的问题（是否可重复）并进行讨论

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Dears Dr Xuejun Li and Dr Xue-Song Liu,

I am writing to kindly request your help with a few (possibly bug) issues we have encountered with the UCSCXenaShiny APP.

The application has been essential for both expediting analysis and training students.

We run the APP from RStudio (2021.09.1 Build 372 in Windows 10).

We encountered three issues with the download of PDF and png plots for the following Quick PanCan Analysis functionalities:

Quick PanCan Analysis – TCGA Survival Analysis

Problem 1.1: PDF and png downloads are corrupted

Problem 1.2: The “number at risk” and “Number of censoring” tables do not plot in R Studio.

Quick PanCan Analysis – PCAWG Molecular Profile Cox Analysis

Problem 2.1: the download bottom for PDF or png does not appear.

Quick PanCan Analysis – PCAWG – Survival Analysis

Problem 3.1: PDF and png downloads are corrupted (PDF) or empty (png).

UCSCXenaShiny_APP_issues.pdf

[ShixiangWang]

问题1.1能重复，最近没有改动过相关代码才对～ @longfei8533 你有空看一下？

问题1.2应该是没有把窗口拉开

[ShixiangWang]

发现一个warning，可能需要更新相关控件

Warning messages:
textInputAddon不再有用。
请用'textInputIcon'。
见help("Deprecated")和help("shinyWidgets-deprecated")。

[longfei8533]

好的 发件人: Shixiang ***@***.***> 发送时间: 2021年11月26日 11:20 收件人: ***@***.***> 抄送: ***@***.***>; ***@***.***> 主题: Re: [openbiox/UCSCXenaShiny] application issue (Issue #230) 问题1.1能重复，最近没有改动过相关代码才对～ @longfei8533<https://github.com/longfei8533> 你有空看一下？ 问题1.2应该是没有把窗口拉开 ― You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#230 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AI7KRKE2NA6PXUDDNIRM3GTUN34IRANCNFSM5IZWDCRQ>. Triage notifications on the go with GitHub Mobile for iOS<https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android<https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[ShixiangWang]

Problem 2.1 PCAWG Molecular Profile Cox Analysis缺乏图像下载按钮，熊逸你看一下？

对了 PCAWG 的生存分析也是相同的问题，龙飞你一起看一下。我刚才查了下近期的修改，我是有更新过对数据子集的提取，是不是影响了你前端方面的设置

169e77382fc4b02ac212cefd5f1a7c07eec916f9，
70722d6

[ShixiangWang]

问题应该都解决了

[ShixiangWang]

没有收到后续回信，暂时关闭了

[quiquemedina]

Dear Shixiang,
Thank you very much for the actualization.
Issues solved with implementing UCSCXenaShiny v1.1.3 based on UCSCXenaTools v1.4.7
Regards,
Enrique