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ClinicalAnalysisStatus.java
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ClinicalAnalysisStatus.java
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/*
* Copyright 2015-2020 OpenCB
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.opencb.opencga.core.models.clinical;
import org.opencb.opencga.core.models.common.InternalStatus;
import java.util.Arrays;
import java.util.List;
public class ClinicalAnalysisStatus extends InternalStatus {
public static final String INCOMPLETE = "INCOMPLETE";
public static final String READY_FOR_VALIDATION = "READY_FOR_VALIDATION";
public static final String READY_FOR_INTERPRETATION = "READY_FOR_INTERPRETATION";
public static final String INTERPRETATION_IN_PROGRESS = "INTERPRETATION_IN_PROGRESS";
// public static final String INTERPRETED = "INTERPRETED";
public static final String READY_FOR_INTEPRETATION_REVIEW = "READY_FOR_INTEPRETATION_REVIEW";
public static final String INTERPRETATION_REVIEW_IN_PROGRESS = "INTERPRETATION_REVIEW_IN_PROGRESS";
public static final String READY_FOR_REPORT = "READY_FOR_REPORT";
public static final String REPORT_IN_PROGRESS = "REPORT_IN_PROGRESS";
public static final String DONE = "DONE";
public static final String REVIEW_IN_PROGRESS = "REVIEW_IN_PROGRESS";
public static final String CLOSED = "CLOSED";
public static final String REJECTED = "REJECTED";
public static final List<String> STATUS_LIST = Arrays.asList(INCOMPLETE, READY, DELETED, READY_FOR_VALIDATION,
READY_FOR_INTERPRETATION, INTERPRETATION_IN_PROGRESS, READY_FOR_INTEPRETATION_REVIEW, INTERPRETATION_REVIEW_IN_PROGRESS,
READY_FOR_REPORT, REPORT_IN_PROGRESS, DONE, REVIEW_IN_PROGRESS, CLOSED, REJECTED);
public ClinicalAnalysisStatus(String status, String message) {
if (isValid(status)) {
init(status, message);
} else {
throw new IllegalArgumentException("Unknown status " + status);
}
}
public ClinicalAnalysisStatus(String status) {
this(status, "");
}
public ClinicalAnalysisStatus() {
this(READY_FOR_INTERPRETATION, "");
}
public static boolean isValid(String status) {
if (InternalStatus.isValid(status)) {
return true;
}
if (STATUS_LIST.contains(status)) {
return true;
}
return false;
}
}