Merge pull request #681 from opencobra/feat-solver-logging

feat: enable solver output on debug logging

HISTORY.rst

@@ -3,6 +3,7 @@ History
 
 Next Release
 ------------
+* Setting the log level to DEBUG now also enables the solver log output.
 
 0.9.13 (2019-12-04)
 -------------------

src/memote/suite/api.py

@@ -99,6 +99,10 @@ def test_model(model, sbml_version=None, results=False, pytest_args=None,
         pytest_args.extend(["--tb", "short"])
     if TEST_DIRECTORY not in pytest_args:
         pytest_args.append(TEST_DIRECTORY)
+    if "-s" not in pytest_args and LOGGER.getEffectiveLevel() <= logging.DEBUG:
+        # Disable pytest capturing so that the solver log output can be seen
+        # immediately.
+        pytest_args.insert(0, "-s")
     plugin = ResultCollectionPlugin(model, sbml_version=sbml_version,
                                     exclusive=exclusive, skip=skip,
                                     experimental_config=experimental)

src/memote/suite/collect.py

@@ -74,6 +74,8 @@ def __init__(self, model, sbml_version=None, experimental_config=None,
         self.results.add_environment_information(self.results.meta)
         self._xcld = frozenset() if exclusive is None else frozenset(exclusive)
         self._skip = frozenset() if skip is None else frozenset(skip)
+        if LOGGER.getEffectiveLevel() <= logging.DEBUG:
+            self._model.solver.configuration.verbosity = 3
 
     def pytest_generate_tests(self, metafunc):
         """Parametrize marked functions at runtime."""