large networks get squashed to the sides of the browser view port #105
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sshermz
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Nov 25, 2017
package updates, etc - New Feature: Added explicit 'Load Sample Data' button on Fetch dialog. Added a couple of new sample files. Refactored and documented sample data files, and how to configure. See 'Sample Data' section above. - New Feature: Added tooltips for Links. Like with the existing Nodes tooltips, Link tooltips support both standard and detailed modes (per the toggle checkbox for tooltip verbosity). Tip: Hover over the text of a Link, which is easier than hovering over a link line, as it's quite thin. - New Feature: Autopositioning tooltips. Now tooltips automatically shift from bottom to top, and from right to left positions automatically to avoid being truncated by the edge of the browser window. - New Feature: Added Gravity to Simulation Force. Helps distribution of atoms within D3 graph client area, at least for small data sets. Related to opencog#105. - Bug Fix: Surface underlying Fetch error message instead of always reporting "Can't Connect to Server" when there's a problem. - Updated many packages to latest versions, including to Angular v5. - Refactoring: Some further refactoring of D3 graphing code. Also Fetch from AtomSpace error handling. Including to add a timeout for http get.
sshermz
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Nov 28, 2017
- Feature Change: Revised Simulation Force to avoid squashing of Nodes / Links to the D3 client area boundaries (includes removal of gravity force from previous commit which only helped in certain cases). Fixes opencog#105. - Samples: Added another sample json file, atoms.oovc\_ensemble\_sti.json, and changed to it as the default built-in sample. - Bug Fix: Suppress tooltips after Fetch until mouse is moved one time. Avoids unintended tooltips when Fetch data and Nodes or Links happen to slide under mouse cursor. - Bug Fix: Fixed stroke width bug in Node decorator drawing code. - Bug Fix: Fixed context menu regression. - Refactoring: More refactoring of the D3 graphing code.
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the repulsion force ends up squashing almost everything against the edges of the window. can the boundaries be made repulsive as well to spread everything out in the space?
attached are 2 scheme files, one is an ensemble of boolean models generated by applying moses to a gene expression data set (115 atoms): oovc_ensemble.scm.txt
and one is a set of three ensembles (including the atoms in the first file) and definitions of the predicates in the ensembles using geneNodes (~ 1000 atoms): moses-models.scm.txt
the first is a definite use case and the second is pushing the boundaries of usefulness. i think visualization of 100s or thousands of nodes could be useful to show large scale structure but is a secondary use case.
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