Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

OFF-EP 0008 — Periodicity-dependent vdW methods and "no-cutoff" option #53

Merged
merged 10 commits into from Aug 2, 2023

Conversation

mattwthompson
Copy link
Member

Resolves #51 #7

@mattwthompson mattwthompson marked this pull request as ready for review August 1, 2023 14:49
Copy link
Member

@jchodera jchodera left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks great, thanks!

As a reminder, OpenMM's CutoffPeriodic still uses a modified reaction field method unless the external solvent dielectric is set to 1, so implementations might need to be aware of this. OpenMM also requires cutoffs to be equal between LJ and electrostatics, but this is not something we should be worried about at the spec level.

Copy link

@davidlmobley davidlmobley left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This looks good to me as well. Thank you! If Jeff approves we could actually get this resolved without meeting to discuss this one.

Copy link
Contributor

@lilyminium lilyminium left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thanks for putting this together @mattwthompson, I think this'll be an important improvement to the spec!

@j-wags
Copy link
Member

j-wags commented Aug 2, 2023

Could this be updated to explicitly say that PME is an allowed periodic_method value? People are already talking about a LJPME FF refit so it'd be good to have that explicitly stated so we can implement support.

@mattwthompson
Copy link
Member Author

I'd prefer that be a separate proposal; I haven't thought through exactly what it would mean to support LJPME (#11 #50 #15 #18 openforcefield/openff-toolkit#989) and I worry doing it wrong the first time would be worse than not doing it at all. I think it warrants more care than tacking it on the end of this proposal.

Copy link
Member

@j-wags j-wags left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Makes sense. Thanks for pushing this forward, LGTM!

@mattwthompson
Copy link
Member Author

Thanks all for the prompt feedback! IIUC these are four approvals from the four committee members, and approvals on GitHub bypass the need for a meeting per se.

@mattwthompson mattwthompson merged commit b3e17f7 into main Aug 2, 2023
1 check passed
@mattwthompson mattwthompson deleted the off-ep-0008 branch August 2, 2023 12:17
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

vdW section should support different methods for periodic and non-periodic systems
5 participants