[PRE REVIEW]: VineCopulas: an open-source Python package for vine copula modelling #6559

editorialbot · 2024-03-30T16:53:25Z

Submitting author: @judithclaassen (Judith Claassen)
Repository: https://github.com/VU-IVM/VineCopulas
Branch with paper.md (empty if default branch):
Version: v0.2.5
Editor: @ymzayek
Reviewers: @haozcbnu, @couasnonanais
Managing EiC: Arfon Smith

Status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/5118d62bcc8a3621ebdd2955f8e88405"><img src="https://joss.theoj.org/papers/5118d62bcc8a3621ebdd2955f8e88405/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/5118d62bcc8a3621ebdd2955f8e88405/status.svg)](https://joss.theoj.org/papers/5118d62bcc8a3621ebdd2955f8e88405)

Author instructions

Thanks for submitting your paper to JOSS @judithclaassen. Currently, there isn't a JOSS editor assigned to your paper.

@judithclaassen if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

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The text was updated successfully, but these errors were encountered:

editorialbot · 2024-03-30T16:53:28Z

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editorialbot · 2024-03-30T16:53:45Z

Software report:

github.com/AlDanial/cloc v 1.90  T=0.07 s (343.4 files/s, 147090.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                           7            718            556           5284
CSV                              2              0              0           1408
Jupyter Notebook                 2              0           1742            264
Markdown                         5            103              0            261
TeX                              1             17              0            126
YAML                             6             18             20            119
TOML                             1              5              0             37
reStructuredText                 1             11              7             11
-------------------------------------------------------------------------------
SUM:                            25            872           2325           7510
-------------------------------------------------------------------------------

Commit count by author:

   109	Claassen
    47	Judith Claassen
     9	Jäger
     6	Elco Koks
     1	Koks

editorialbot · 2024-03-30T16:53:53Z

Paper file info:

📄 Wordcount for paper.md is 1016

✅ The paper includes a Statement of need section

editorialbot · 2024-03-30T16:53:56Z

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

editorialbot · 2024-03-30T16:54:32Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.3389/fnins.2022.910122 is OK
- 10.1146/annurev-statistics-040220-101153 is OK
- 10.5281/ZENODO.10435751 is OK
- 10.1214/aos/1031689016 is OK
- 10.5194/nhess-23-2251-2023 is OK
- 10.5194/hess-21-2701-2017 is OK

MISSING DOIs

- No DOI given, and none found for title: copula: Multivariate Dependence with Copulas
- No DOI given, and none found for title: VineCopula: Statistical Inference of Vine Copulas
- No DOI given, and none found for title: CDVineCopulaConditional: Sampling from Conditional...
- No DOI given, and none found for title: copulas: Create tabular synthetic data using copul...
- No DOI given, and none found for title: Monte Carlo simulation of vine dependent random va...
- 10.1201/9780367803896 may be a valid DOI for title: Multivariate models and multivariate dependence co...

INVALID DOIs

- https://doi.org/10.1201/b17116 is INVALID because of 'https://doi.org/' prefix

editorialbot · 2024-03-30T16:54:55Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

arfon · 2024-03-30T17:01:25Z

@judithclaassen - thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

crvernon · 2024-04-22T12:34:09Z

👋 @ymzayek - would you be willing to edit this submission?

crvernon · 2024-04-22T12:34:19Z

@editorialbot invite @ymzayek as editor

editorialbot · 2024-04-22T12:34:22Z

Invitation to edit this submission sent!

ymzayek · 2024-04-22T13:40:27Z

@crvernon yes I can edit this submission

crvernon · 2024-04-22T14:43:50Z

@editorialbot assign @ymzayek as editor

Thanks @ymzayek!

editorialbot · 2024-04-22T14:43:53Z

Assigned! @ymzayek is now the editor

ymzayek · 2024-04-25T14:02:06Z

@editorialbot generate pdf

editorialbot · 2024-04-25T14:03:39Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

ymzayek · 2024-04-25T14:09:35Z

@editorialbot check references

editorialbot · 2024-04-25T14:09:57Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.3389/fnins.2022.910122 is OK
- 10.1146/annurev-statistics-040220-101153 is OK
- 10.5281/ZENODO.10435751 is OK
- 10.1214/aos/1031689016 is OK
- 10.5194/nhess-23-2251-2023 is OK
- 10.5194/hess-21-2701-2017 is OK

MISSING DOIs

- No DOI given, and none found for title: copula: Multivariate Dependence with Copulas
- No DOI given, and none found for title: VineCopula: Statistical Inference of Vine Copulas
- No DOI given, and none found for title: CDVineCopulaConditional: Sampling from Conditional...
- No DOI given, and none found for title: copulas: Create tabular synthetic data using copul...
- No DOI given, and none found for title: Monte Carlo simulation of vine dependent random va...
- 10.1201/9780367803896 may be a valid DOI for title: Multivariate models and multivariate dependence co...

INVALID DOIs

- https://doi.org/10.1201/b17116 is INVALID because of 'https://doi.org/' prefix

ymzayek · 2024-04-25T14:16:12Z

Hi @judithclaassen, thank you for submitting your work to JOSS. I am the handling editor. Do you have any suggestion for reviewers? You can use the potential reviewers list provided at the top of this issue. I think people interested in statistics and dependency modeling as well as Python would be a good fit. If you have suggestions, please provide a list of potential reviewers here but do not use the @ character to avoid receiving unwanted notifications. Thank you in advance.

ymzayek · 2024-04-25T14:17:15Z

@judithclaassen are you also able to address the missing and invalid DOIs in the reference check summary?

judithclaassen · 2024-05-02T10:03:35Z

@editorialbot check references

editorialbot · 2024-05-02T10:04:02Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.3389/fnins.2022.910122 is OK
- 10.1146/annurev-statistics-040220-101153 is OK
- 10.5281/ZENODO.10435751 is OK
- 10.1214/aos/1031689016 is OK
- 10.1201/9780367803896 is OK
- 10.5194/nhess-23-2251-2023 is OK
- 10.5194/hess-21-2701-2017 is OK

MISSING DOIs

- No DOI given, and none found for title: copula: Multivariate Dependence with Copulas
- No DOI given, and none found for title: VineCopula: Statistical Inference of Vine Copulas
- No DOI given, and none found for title: CDVineCopulaConditional: Sampling from Conditional...
- No DOI given, and none found for title: copulas: Create tabular synthetic data using copul...
- No DOI given, and none found for title: Monte Carlo simulation of vine dependent random va...

INVALID DOIs

- https://doi.org/10.1201/b17116 is INVALID because of 'https://doi.org/' prefix

judithclaassen · 2024-05-02T10:08:09Z

@editorialbot check references

editorialbot · 2024-05-02T10:08:45Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.3389/fnins.2022.910122 is OK
- 10.1201/b17116 is OK
- 10.1146/annurev-statistics-040220-101153 is OK
- 10.5281/ZENODO.10435751 is OK
- 10.1214/aos/1031689016 is OK
- 10.1201/9780367803896 is OK
- 10.5194/nhess-23-2251-2023 is OK
- 10.5194/hess-21-2701-2017 is OK

MISSING DOIs

- No DOI given, and none found for title: copula: Multivariate Dependence with Copulas
- No DOI given, and none found for title: VineCopula: Statistical Inference of Vine Copulas
- No DOI given, and none found for title: CDVineCopulaConditional: Sampling from Conditional...
- No DOI given, and none found for title: copulas: Create tabular synthetic data using copul...
- No DOI given, and none found for title: Monte Carlo simulation of vine dependent random va...

INVALID DOIs

- None

judithclaassen · 2024-05-02T14:18:20Z

@ymzayek , Thank you so much for agreeing to be the editor for our paper. We would like to suggest two reviewers that are not on the list of people that have already agreed to review JOSS, however, their expertise are very relevant to this package:

Anais Couasnon (couasnonanais)
Zengchao Hao (haozcbnu)

As for the missing and invalid DOI's, I addressed one invalid DOI and added one missing DOI. the other 'missing' DOI's are sources that do not have a DOI, such as other packages.

Thank you very much in advance

ymzayek · 2024-05-06T07:36:08Z

Hello @couasnonanais and @haozcbnu,

Would you be willing to assist in reviewing this submission for JOSS (Journal of Open Source Software)?

JOSS publishes articles about open source research software. The submission I'd like you to review is titled:

VineCopulas: an open-source Python package for vine copula modelling

You can find more information at the top of this Github issue (#6559).

The review process at JOSS is unique: it takes place in a GitHub issue, is open, and author-reviewer-editor conversations are encouraged. If you have any questions please let me know.

This is the pre-review issue. After setting at least 2 reviewers we will start the review process in a separate thread. In that thread, there will be 23 check items for each single reviewer.

Thank you in advance!

haozcbnu · 2024-05-06T14:09:19Z

I'm happy to review this.

ymzayek · 2024-05-06T14:37:20Z

@editorialbot add @haozcbnu as reviewer

editorialbot · 2024-05-06T14:37:22Z

@haozcbnu added to the reviewers list!

ymzayek · 2024-05-06T14:40:33Z

@haozcbnu thanks! Once I find at least one other reviewer, the review process will start in a separate thread and I'll help you get started

couasnonanais · 2024-05-07T07:25:34Z

Hi, I am also happy to review it. Anaïs Le lun. 6 mai 2024 à 09:36, Yasmin ***@***.***> a écrit :

…

Hello @couasnonanais <https://github.com/couasnonanais> and @haozcbnu <https://github.com/haozcbnu>, Would you be willing to assist in reviewing this submission for JOSS (Journal of Open Source Software)? JOSS publishes articles about open source research software. The submission I'd like you to review is titled: VineCopulas: an open-source Python package for vine copula modelling You can find more information at the top of this Github issue (#6559 <#6559>). The review process at JOSS is unique: it takes place in a GitHub issue, is open, and author-reviewer-editor conversations are encouraged. If you have any questions please let me know. This is the pre-review issue. After setting at least 2 reviewers we will start the review process in a separate thread. In that thread, there will be 23 check items for each single reviewer. Thank you in advance! — Reply to this email directly, view it on GitHub <#6559 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AG2TOAJ57KFP5MDBXJFMBKLZA4XH5AVCNFSM6AAAAABFPV266GVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDAOJVGM3DIOJRGA> . You are receiving this because you were mentioned.Message ID: ***@***.***>

ymzayek · 2024-05-07T10:08:12Z

@editorialbot add @couasnonanais as reviewer

editorialbot · 2024-05-07T10:08:14Z

@couasnonanais added to the reviewers list!

ymzayek · 2024-05-07T10:09:04Z

Thanks @haozcbnu and @couasnonanaisfor agreeing to review this paper.

The review will start in a separate thread.

@judithclaassen you can follow the review in the review issue that will be opened.

ymzayek · 2024-05-07T10:09:13Z

@editorialbot start review

editorialbot · 2024-05-07T10:09:16Z

OK, I've started the review over in #6728.

editorialbot added pre-review Track: 5 (DSAIS) Data Science, Artificial Intelligence, and Machine Learning labels Mar 30, 2024

editorialbot added Python TeX labels Mar 30, 2024

arfon added the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Mar 30, 2024

editorialbot assigned ymzayek Apr 22, 2024

crvernon removed the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Apr 22, 2024

editorialbot assigned haozcbnu May 6, 2024

editorialbot assigned couasnonanais May 7, 2024

editorialbot closed this as completed May 7, 2024

[PRE REVIEW]: VineCopulas: an open-source Python package for vine copula modelling #6559

[PRE REVIEW]: VineCopulas: an open-source Python package for vine copula modelling #6559

Comments

editorialbot commented Mar 30, 2024 • edited

Status

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haozcbnu commented May 6, 2024 • edited

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couasnonanais commented May 7, 2024 via email

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ymzayek commented May 7, 2024

ymzayek commented May 7, 2024

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editorialbot commented Mar 30, 2024 •

edited

haozcbnu commented May 6, 2024 •

edited