[PRE REVIEW]: GRBoondi: A code for evolving Generalized Proca theories on arbitrary backgrounds #6727

editorialbot · 2024-05-07T09:43:39Z

Submitting author: @ShaunFell (Shaun D. B. Fell)
Repository: https://github.com/ShaunFell/GRBoondi
Branch with paper.md (empty if default branch): paper
Version: v1.0.0
Editor: @xuanxu
Reviewers: Pending
Managing EiC: Daniel S. Katz

Status

Status badge code:

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Markdown: [![status](https://joss.theoj.org/papers/9565689c5c5d5da3c39adb87a4e7d255/status.svg)](https://joss.theoj.org/papers/9565689c5c5d5da3c39adb87a4e7d255)

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editorialbot · 2024-05-07T09:43:41Z

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editorialbot · 2024-05-07T09:43:58Z

Software report:

github.com/AlDanial/cloc v 1.90  T=0.16 s (2235.2 files/s, 298306.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
C/C++ Header                   271           5246           5229          23500
C++                             35           1184           1003           7366
Python                           3            181            140            621
TeX                              1              0              0            591
make                            29            224            143            376
YAML                             5             51              7            316
INI                              3             53             65            165
Markdown                         2             39              0             77
-------------------------------------------------------------------------------
SUM:                           349           6978           6587          33012
-------------------------------------------------------------------------------

Commit count by author:

   165	ShaunFell
    39	Dina Traykova
    22	Shaun Fell
    15	SamuelBrady
     7	KAClough
     6	dinatraykova
     5	Josu C. Aurrekoetxea
     1	Warrick Ball
     1	Zipeng Wang
     1	sbrady00

editorialbot · 2024-05-07T09:44:02Z

Paper file info:

📄 Wordcount for paper.md is 1810

✅ The paper includes a Statement of need section

editorialbot · 2024-05-07T09:44:05Z

License info:

✅ License found: BSD 3-Clause "New" or "Revised" License (Valid open source OSI approved license)

editorialbot · 2024-05-07T09:44:53Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

editorialbot · 2024-05-07T09:45:23Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1016/j.physrep.2018.11.006 is OK
- 10.1088/1475-7516/2014/05/015 is OK
- 10.21105/joss.03703 is OK
- 10.1088/1475-7516/2022/11/050 is OK
- 10.1103/physrevlett.129.151102 is OK
- 10.1103/physrevlett.129.151103 is OK
- 10.1103/PhysRevD.107.104036 is OK
- 10.1103/physrevd.108.044022 is OK
- 10.1103/PhysRevD.107.123535 is OK
- 10.1088/1475-7516/2022/03/053 is OK
- 10.1088/0264-9381/32/23/234003 is OK
- 10.1088/0264-9381/32/24/245011 is OK
- 10.21105/joss.05956 is OK
- 10.5281/zenodo.10380404 is OK
- 10.1103/PhysRevD.76.104015 is OK
- 10.5281/zenodo.3565474 is OK
- 10.1103/PhysRevD.77.024027 is OK
- 10.1103/PhysRevD.82.024005 is OK
- 10.1103/PhysRevD.85.124010 is OK
- 10.1142/9789812834300_0200 is OK
- 10.1016/S0010-4655(02)00847-0 is OK
- 10.1103/PhysRevD.93.063006 is OK
- 10.5281/zenodo.4734670 is OK
- 10.1016/j.jcp.2016.12.059 is OK
- 10.1142/S0218271819500147 is OK
- 10.1103/PhysRevD.97.064036 is OK
- 10.1103/PhysRevD.93.124059 is OK
- 10.1088/1475-7516/2020/01/007 is OK
- 10.1088/1361-6382/aad7f6 is OK
- 10.3847/1538-4365/ac157b is OK
- 10.1201/b12985 is OK
- 10.1109/MCSE.2007.55 is OK
- 10.1016/j.physletb.2016.07.052 is OK
- 10.1016/j.physletb.2016.04.017 is OK
- 10.1088/1475-7516/2016/02/004 is OK
- 10.1007/JHEP04(2014)067 is OK
- 10.1088/1475-7516/2016/06/048 is OK
- 10.1103/PhysRevD.94.044024 is OK
- 10.1103/PhysRevD.93.104016 is OK
- 10.1088/1475-7516/2017/08/024 is OK
- 10.1103/PhysRevD.96.084049 is OK
- 10.1103/PhysRevD.95.123540 is OK

MISSING DOIs

- 10.1103/physrevd.106.084022 may be a valid DOI for title: Resolving the pathologies of self-interacting Proc...
- No DOI given, and none found for title: 3+1 Formalism in General Relativity
- No DOI given, and none found for title: Chombo software package for AMR applications - des...
- 10.1007/3-540-36569-9_13 may be a valid DOI for title: The Cactus Framework and Toolkit: Design and Appli...
- No DOI given, and none found for title: Kranc: Kranc Assembles Numerical Code
- No DOI given, and none found for title: The intrinsic pathology of self-interacting vector...

INVALID DOIs

- https://doi.org/10.1016/j.dark.2021.100819 is INVALID because of 'https://doi.org/' prefix

ShaunFell · 2024-05-07T09:51:26Z

I would like to suggest Katy Clough to be the reviewer. We've talked in privately and she has expressed her desire to be the reviewer. Thanks!

danielskatz · 2024-05-07T09:55:50Z

@ShaunFell - I think this ended up in the wrong track, so it will likely be moved, which is the next step. Then, once an editor is chosen, they will need to find at least 2 reviewers, so your suggestions on perhaps 4 or 5 would be welcome. Please see the first comment in this issue for a little guidance on this

ShaunFell · 2024-05-07T10:19:59Z

Ah, you're right. This should probably be in track 1. Thanks for the help.

ShaunFell · 2024-05-08T09:26:15Z

@editorialbot check repository

editorialbot · 2024-05-08T09:26:37Z

Software report:

github.com/AlDanial/cloc v 1.90  T=0.15 s (2260.3 files/s, 301688.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
C/C++ Header                   271           5246           5229          23500
C++                             35           1184           1003           7366
Python                           3            181            140            621
TeX                              1              0              0            593
make                            29            224            143            376
YAML                             5             51              7            316
INI                              3             53             65            165
Markdown                         2             40              0             78
-------------------------------------------------------------------------------
SUM:                           349           6979           6587          33015
-------------------------------------------------------------------------------

Commit count by author:

     2	Shaun-F
     1	ShaunFell

editorialbot · 2024-05-08T09:26:43Z

Paper file info:

📄 Wordcount for paper.md is 1810

✅ The paper includes a Statement of need section

editorialbot · 2024-05-08T09:26:46Z

License info:

✅ License found: BSD 3-Clause "New" or "Revised" License (Valid open source OSI approved license)

ShaunFell · 2024-05-08T10:28:31Z

@editorialbot check references

editorialbot · 2024-05-08T10:30:01Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1016/j.physrep.2018.11.006 is OK
- 10.1088/1475-7516/2014/05/015 is OK
- 10.21105/joss.03703 is OK
- 10.1088/1475-7516/2022/11/050 is OK
- 10.1103/physrevlett.129.151102 is OK
- 10.1103/physrevlett.129.151103 is OK
- 10.1103/PhysRevD.107.104036 is OK
- 10.1103/physrevd.108.044022 is OK
- 10.1016/j.dark.2021.100819 is OK
- 10.1103/PhysRevD.107.123535 is OK
- 10.1088/1475-7516/2022/03/053 is OK
- 10.1088/0264-9381/32/23/234003 is OK
- 10.1007/978-3-642-24525-1 is OK
- 10.1088/0264-9381/32/24/245011 is OK
- 10.21105/joss.05956 is OK
- 10.5281/zenodo.10380404 is OK
- 10.1103/PhysRevD.76.104015 is OK
- 10.5281/zenodo.3565474 is OK
- 10.1103/PhysRevD.77.024027 is OK
- 10.1103/PhysRevD.82.024005 is OK
- 10.1103/PhysRevD.85.124010 is OK
- 10.1142/9789812834300_0200 is OK
- 10.1016/S0010-4655(02)00847-0 is OK
- 10.1103/PhysRevD.93.063006 is OK
- 10.5281/zenodo.4734670 is OK
- 10.1016/j.jcp.2016.12.059 is OK
- 10.1142/S0218271819500147 is OK
- 10.1103/PhysRevD.97.064036 is OK
- 10.1103/PhysRevD.93.124059 is OK
- 10.1088/1475-7516/2020/01/007 is OK
- 10.1088/1361-6382/aad7f6 is OK
- 10.3847/1538-4365/ac157b is OK
- 10.1201/b12985 is OK
- 10.48550/arXiv.2205.07784 is OK
- 10.1109/MCSE.2007.55 is OK
- 10.1016/j.physletb.2016.07.052 is OK
- 10.1016/j.physletb.2016.04.017 is OK
- 10.1088/1475-7516/2016/02/004 is OK
- 10.1007/JHEP04(2014)067 is OK
- 10.1088/1475-7516/2016/06/048 is OK
- 10.1103/PhysRevD.94.044024 is OK
- 10.1103/PhysRevD.93.104016 is OK
- 10.1088/1475-7516/2017/08/024 is OK
- 10.1103/PhysRevD.96.084049 is OK
- 10.1103/PhysRevD.95.123540 is OK

MISSING DOIs

- 10.1103/physrevd.106.084022 may be a valid DOI for title: Resolving the pathologies of self-interacting Proc...
- Errored finding suggestions for "Chombo software package for AMR applications - des...", please try later
- 10.1007/3-540-36569-9_13 may be a valid DOI for title: The Cactus Framework and Toolkit: Design and Appli...
- No DOI given, and none found for title: Kranc: Kranc Assembles Numerical Code

INVALID DOIs

- None

ShaunFell · 2024-05-08T12:32:34Z

@editorialbot check references

editorialbot · 2024-05-08T12:33:22Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

OK DOIs

- 10.1016/j.physrep.2018.11.006 is OK
- 10.1088/1475-7516/2014/05/015 is OK
- 10.48550/arXiv.2206.14320 is OK
- 10.21105/joss.03703 is OK
- 10.1088/1475-7516/2022/11/050 is OK
- 10.1103/physrevlett.129.151102 is OK
- 10.1103/physrevlett.129.151103 is OK
- 10.1103/PhysRevD.107.104036 is OK
- 10.1103/physrevd.108.044022 is OK
- 10.1016/j.dark.2021.100819 is OK
- 10.1103/PhysRevD.107.123535 is OK
- 10.1088/1475-7516/2022/03/053 is OK
- 10.1088/0264-9381/32/23/234003 is OK
- 10.1007/978-3-642-24525-1 is OK
- 10.1088/0264-9381/32/24/245011 is OK
- 10.21105/joss.05956 is OK
- 10.5281/zenodo.10380404 is OK
- 10.1007/3-540-36569-9_13 is OK
- 10.1016/j.cpc.2006.02.002 is OK
- 10.1103/PhysRevD.76.104015 is OK
- 10.5281/zenodo.3565474 is OK
- 10.1103/PhysRevD.77.024027 is OK
- 10.1103/PhysRevD.82.024005 is OK
- 10.1103/PhysRevD.85.124010 is OK
- 10.1142/9789812834300_0200 is OK
- 10.1016/S0010-4655(02)00847-0 is OK
- 10.1103/PhysRevD.93.063006 is OK
- 10.5281/zenodo.4734670 is OK
- 10.1016/j.jcp.2016.12.059 is OK
- 10.1142/S0218271819500147 is OK
- 10.1103/PhysRevD.97.064036 is OK
- 10.1103/PhysRevD.93.124059 is OK
- 10.1088/1475-7516/2020/01/007 is OK
- 10.1088/1361-6382/aad7f6 is OK
- 10.3847/1538-4365/ac157b is OK
- 10.1201/b12985 is OK
- 10.48550/arXiv.2205.07784 is OK
- 10.1109/MCSE.2007.55 is OK
- 10.1016/j.physletb.2016.07.052 is OK
- 10.1016/j.physletb.2016.04.017 is OK
- 10.1088/1475-7516/2016/02/004 is OK
- 10.1007/JHEP04(2014)067 is OK
- 10.1088/1475-7516/2016/06/048 is OK
- 10.1103/PhysRevD.94.044024 is OK
- 10.1103/PhysRevD.93.104016 is OK
- 10.1088/1475-7516/2017/08/024 is OK
- 10.1103/PhysRevD.96.084049 is OK
- 10.1103/PhysRevD.95.123540 is OK

MISSING DOIs

- No DOI given, and none found for title: Chombo software package for AMR applications - des...

INVALID DOIs

- None

ShaunFell · 2024-05-08T12:34:29Z

@editorialbot generate pdf

editorialbot · 2024-05-08T12:35:53Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

dfm · 2024-05-08T15:30:38Z

@ShaunFell — Thank you for your submission! It seems like a large fraction of the code included in this repo is a copy of GRChombo which was previously published in JOSS. Could you clarify which parts of the project are new to this submission?

In the meantime, all suitable editors are working at full capacity so I will "waitlist" this submission until someone is available. Thanks for your patience!

ShaunFell · 2024-05-08T15:37:05Z

@dfm Everything is new besides the folder Source/GRChombo. I included the GRChombo source code in the repo to ensure updates to the GRChombo source code don't break the functionality of GRBoondi. Besides that, everything else in the Source/ directory is my own, as well as the everything in PostProcessing/, Tests/, InstallNotes/, and Examples/.

That is to say, everything besides Source/GRChombo was built by myself.

Ok, thank you for letting me know! Would you happen to know approximately how long the wait is?

ShaunFell · 2024-05-09T06:47:13Z

For future reviewers, to gauge the size of GRBoondi itself without the GRChombo source code, I run
cloc --exclude-dir=GRChombo GRBoondi
which produces:

       202 text files.
     161 unique files.                                          
      78 files ignored.

 github.com/AlDanial/cloc v 1.90  T=3.89 s (32.4 files/s, 3947.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
C/C++ Header                    95           1747           1762           7258
C++                              9            349            261           2030
Python                           3            181            140            621
YAML                             5             51              7            316
make                            10             83             51            198
INI                              3             53             65            165
Markdown                         1             11              0             16
-------------------------------------------------------------------------------
SUM:                           126           2475           2286          10604
-------------------------------------------------------------------------------

dfm · 2024-05-09T15:13:06Z

Thanks for the info, @ShaunFell!

dfm · 2024-06-01T21:08:51Z

@editorialbot invite @xuanxu as editor

editorialbot · 2024-06-01T21:08:53Z

Invitation to edit this submission sent!

dfm · 2024-06-01T21:11:15Z

I note that @kaclough has been recommended as a reviewer.

xuanxu · 2024-06-03T08:13:27Z

@editorialbot assign me as editor

editorialbot · 2024-06-03T08:13:31Z

Assigned! @xuanxu is now the editor

editorialbot added pre-review Track: 7 (CSISM) Computer science, Information Science, and Mathematics labels May 7, 2024

editorialbot added C++ Python Mathematica labels May 7, 2024

editorialbot added Track: 1 (AASS) Astronomy, Astrophysics, and Space Sciences and removed Track: 7 (CSISM) Computer science, Information Science, and Mathematics labels May 7, 2024

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dfm added the waitlisted Submissions in the JOSS backlog due to reduced service mode. label May 8, 2024

editorialbot assigned xuanxu Jun 3, 2024

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[PRE REVIEW]: GRBoondi: A code for evolving Generalized Proca theories on arbitrary backgrounds #6727

[PRE REVIEW]: GRBoondi: A code for evolving Generalized Proca theories on arbitrary backgrounds #6727

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edited

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edited

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[PRE REVIEW]: GRBoondi: A code for evolving Generalized Proca theories on arbitrary backgrounds #6727

[PRE REVIEW]: GRBoondi: A code for evolving Generalized Proca theories on arbitrary backgrounds #6727

Comments

editorialbot commented May 7, 2024 • edited

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