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fix examples for ref and autoref #1341

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Fix: #1340

looks like this wasn't working even before the transition to myst: https://web.archive.org/web/20230925202053/https://joss.readthedocs.io/en/latest/submitting.html#internal-references

left in the mention of the markdown-style labels even if they aren't working for now bc i assume that will be fixed.

Before:
Screenshot 2024-05-21 at 8 19 26 PM

After:
Screenshot 2024-05-21 at 8 18 52 PM

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LGTM

Consulted with @tarleb; the problem is that the labels mentioned in the docs do work, but only when going via ConTeXt instead of LaTeX. We expected a switch to ConTeXt soon, so this wasn't implemented for LaTeX. Maybe is better to fix the LaTeX output rather than changing the docs.

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xuanxu commented May 22, 2024

@arfon about ConTeXt vs LaTeX: any word on what you think we'll use in the future?

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Gotcha! Didnt know that. Feel free to close this if other plans

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issue about cross references
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