/
getThumbnail.m
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/
getThumbnail.m
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function thumbnail = getThumbnail(session, image, varargin)
% GETTHUMBNAIL Retrieve cache thumbnail from an image on the OMERO server
%
% thumbnail = getThumbnail(session, image) returns the cache thumbnail
% for the input image.
%
% thumbnail = getThumbnail(session, image, width, height) also sets the
% width and the height of the retrieved thumbnail.
%
% thumbnail = getThumbnail(session, imageID) returns the cache thumbnail
% for the input image identifier.
%
% thumbnail = getThumbnail(session, imageID, width, height) also sets the
% width and the height of the retrieved thumbnail.
%
% Examples:
%
% thumbnail = getThumbnail(session, image);
% thumbnail = getThumbnail(session, image, width, height);
% thumbnail = getThumbnail(session, imageID);
% thumbnail = getThumbnail(session, imageID, width, height);
%
% See also: GETTHUMBNAILBYLONGESTSIDE, GETTHUMBNAILSET,
% GETTHUMBNAILBYLONGESTSIDESET
% Copyright (C) 2013 University of Dundee & Open Microscopy Environment.
% All rights reserved.
%
% This program is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License along
% with this program; if not, write to the Free Software Foundation, Inc.,
% 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
% Input check
isValidImageInput = @(x) isscalar(x) && ...
(isa(x, 'omero.model.ImageI') || isnumeric(x));
isValidThumbnailSize = @(x) isscalar(x) && x > 2 && round(x) == x;
ip = inputParser();
ip.addRequired('image', isValidImageInput);
ip.addOptional('width', [], isValidThumbnailSize);
ip.addOptional('height', [], isValidThumbnailSize);
ip.parse(image, varargin{:});
% Format input thumbnail dimensions
width = ip.Results.width;
height = ip.Results.height;
if ~isempty(width), width = rint(width); end
if ~isempty(height), height = rint(height); end
% Get the image if image identifier is input
if isnumeric(image),
image = getImages(session, ip.Results.image);
assert(numel(image) == 1, 'No image found with ID: %u', ip.Results.image);
end
% Create store to retrieve thumbnails and set pixels Id
store = session.createThumbnailStore();
store.setPixelsId(image.getPrimaryPixels().getId().getValue());
% Retrieve cache thumbnail
byteArray = store.getThumbnail(width, height);
store.close();
% Convert byteArray into Matlab image
stream = java.io.ByteArrayInputStream(byteArray);
image = javax.imageio.ImageIO.read(stream);
stream.close();
thumbnail = JavaImageToMatlab(image);