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templates.xml
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/
templates.xml
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<icegrid>
<!--
OMERO.grid Application Descriptor
Copyright 2008 Glencoe Software, Inc. All Rights Reserved.
Use is subject to license terms supplied in LICENSE.txt
-->
<!--
This file was generated by the OMERO CLI.
Do not edit directly but see bin/omero admin rewrite -h for details.
-->
<!--
The properties elements are referenced in the server-template
elements below, e.g. <properties refid="Blitz"/> Properties
added later in each block override earlier properties. Every
server-template references the "Profile" properties block
defined in default.xml and windefault.xml which can be used
for customizations.
-->
<properties id="Blitz">
<property name="Ice.Default.CollocationOptimized" value="0"/>
<property name="omero.router.insecure" value="${INSECUREROUTER}"/>
</properties>
<properties id="Repository">
<property name="omero.repo.wait" value="300"/><!-- seconds -->
</properties>
<properties id="Basics">
<property name="Ice.MessageSizeMax" value="250000"/> <!-- 250 MB -->
<property name="Ice.CacheMessageBuffers" value="0"/>
<property name="Ice.Override.ConnectTimeout" value="5000"/>
</properties>
<properties id="SingleThreaded">
<property name="Ice.ThreadPool.Client.Size" value="1"/>
<property name="Ice.ThreadPool.Client.SizeMax" value="1"/>
<property name="Ice.ThreadPool.Server.Size" value="1"/>
<property name="Ice.ThreadPool.Server.SizeMax" value="1"/>
</properties>
<properties id="MultiThreaded">
<property name="Ice.ThreadPool.Client.Size" value="2"/>
<property name="Ice.ThreadPool.Client.SizeMax" value="50"/>
<property name="Ice.ThreadPool.Server.Size" value="10"/>
<property name="Ice.ThreadPool.Server.SizeMax" value="100"/>
</properties>
<properties id="JavaServer">
<target name="adh">
<property name="Ice.Default.Protocol" value="ssl"/>
<property name="Ice.Plugin.IceSSL" value="IceSSL.PluginFactory"/>
<property name="IceSSL.Ciphers" value="NONE (DH_anon)"/>
<property name="IceSSL.VerifyPeer" value="0"/>
</target>
<target name="ssl">
<property name="Ice.Default.Protocol" value="ssl"/>
<property name="Ice.Plugin.IceSSL" value="IceSSL.PluginFactory"/>
<property name="IceSSL.DefaultDir" value="etc/certs"/>
<property name="IceSSL.CertFile" value="pubkey.pem"/>
<property name="IceSSL.KeyFile" value="privkey.pem"/>
<property name="IceSSL.CertAuthFile" value="ca.pem"/>
</target>
<target name="noipv6">
<!--
Activate this option by appending "noipv6" to your start
command: bin/omero admin start noipv6
You may want to make this property active by
default if you are seeing "Protocol family unavailable"
errors. To do that, use bin/omero config set Ice.IPv6 0
See https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start
for more information.
-->
<property name="Ice.IPv6" value="0"/>
</target>
</properties>
<properties id="PythonServer">
<property name="Ice.ImplicitContext" value="Shared"/>
<!-- Default logging settings for Python servers. -->
<property name="omero.logging.directory" value="${OMERO_LOGS}"/>
<property name="omero.logging.timedlog" value="False"/>
<property name="omero.logging.logsize" value="5000000"/>
<property name="omero.logging.lognum" value="9"/>
<property name="omero.logging.level" value="20"/>
<target name="debug">
<property name="omero.logging.level" value="10"/>
</target>
<!-- From the python documentation
CRITICAL 50
ERROR 40
WARNING 30
INFO 20
DEBUG 10
NOTSET 0
-->
</properties>
<properties id="CppServer">
<target name="adh">
<property name="Ice.Default.Protocol" value="ssl"/>
<property name="Ice.Plugin.IceSSL" value="IceSSL:createIceSSL"/>
<property name="IceSSL.Ciphers" value="ADH"/>
<property name="IceSSL.VerifyPeer" value="0"/>
</target>
<target name="ssl">
<property name="Ice.Default.Protocol" value="ssl"/>
<property name="Ice.Plugin.IceSSL" value="IceSSL:createIceSSL"/>
<property name="IceSSL.DefaultDir" value="etc/certs"/>
<property name="IceSSL.CertFile" value="pubkey.pem"/>
<property name="IceSSL.KeyFile" value="privkey.pem"/>
<property name="IceSSL.CertAuthFile" value="ca.pem"/>
</target>
</properties>
<properties id="DropBox">
<!-- config settings for OmeroFS (moved from fsConfig)
All times are in seconds.
-->
<!-- These duplicate info that could be got from elsewhere -->
<!-- They should ultimately be removed from here. -->
<property name="omero.fs.host" value="localhost"/>
<!-- general -->
<property name="omero.fs.port" value="${ROUTERPORT}"/>
<property name="omero.fs.maxRetries" value="5"/>
<property name="omero.fs.retryInterval" value="3"/>
<property name="omero.fs.defaultDropBoxDir" value="DropBox"/>
<property name="omero.fs.platformCheck" value="True"/>
<!--
The remaining items can take the form of a semicolon separated list,
one item for each user in the first property. Properties that
are lists themselves are then comma-separated.
default is a standard all-user dropbox.
e.g. <property name="omero.fs.importUsers" value="default;root"/>
The empty first element below defers to the default system dropbox location:
<property name="omero.fs.watchDir" value=";/OMERODEV/OtherBox"/>
<property name="omero.fs.eventTypes" value="Creation,Modification;Creation"/>
<property name="omero.fs.importArgs" value="-report;-report -send -email=test@example.com"/>
Hyphens in the preceeding value should be doubled. Not allowed in XML comments.
...
-->
<property name="omero.fs.importUsers" value="default"/>
<property name="omero.fs.watchDir" value=""/>
<property name="omero.fs.eventTypes" value="Creation,Modification"/>
<property name="omero.fs.pathMode" value="Follow"/>
<property name="omero.fs.whitelist" value=""/>
<property name="omero.fs.blacklist" value=""/>
<property name="omero.fs.timeout" value="0.0"/>
<property name="omero.fs.timeToLive" value="0"/>
<property name="omero.fs.timeToIdle" value="600"/>
<property name="omero.fs.blockSize" value="0"/>
<property name="omero.fs.ignoreSysFiles" value="True"/>
<property name="omero.fs.ignoreDirEvents" value="True"/>
<property name="omero.fs.dirImportWait" value="60"/>
<property name="omero.fs.fileBatch" value="10"/>
<property name="omero.fs.throttleImport" value="10"/>
<property name="omero.fs.readers" value=""/>
<property name="omero.fs.importArgs" value=""/>
</properties>
<!--
Java Servers
-->
<server-template id="BlitzTemplate">
<parameter name="index"/>
<parameter name="config" default="default"/>
<parameter name="jmxhost" default=""/>
<parameter name="jmxport" default="3001"/>
<server id="Blitz-${index}" exe="${JAVA}" activation="always" pwd="${OMERO_HOME}">
<option>MEMORY:blitz</option>
<target name="debug">
<option>-agentlib:jdwp=server=y,suspend=y,transport=dt_socket,address=8787</option>
</target>
<target name="blitz-gc">
<option>-verbose:gc</option>
<option>-XX:+PrintGCTimeStamps</option>
<option>-XX:+PrintGCDetails</option>
</target>
<target name="jprofiler">
<!-- In order to successfully startup with the "jprofiler" target,
you will need to have set DYLD_LIBRARY_PATH, LD_LIBRARY_PATH, or PATH
(dependending on your operating system) to include the JProfiler
libraries and have JPROFILER_AGENT and JPROFILER_CONFIG set. E.g.:
export DYLD_LIBRARY_PATH=/Applications/jprofiler5/bin/macos/
export JPROFILER_AGENT=/Applications/jprofiler5
export JPROFILER_CONFIG=$HOME/.jprofiler5/config.xml
-->
<option>-Xint</option><!-- Interpreted-mode only -->
<option>-agentlib:jprofilerti=port=8849,id=108,config=${JPROFILER_CONFIG}</option>
<option>-Xbootclasspath/a:${JPROFILER_AGENT}</option>
</target>
<target name="Blitz-hprof">
<option>-agentlib:hprof=cpu=samples,cutoff=0,thread=y,interval=1,depth=50,force=y,file=${OMERO_LOGS}Blitz-${index}.hprof</option>
</target>
<option>-Djava.awt.headless=true</option>
<option>-Dlogback.configurationFile=${OMERO_ETC}logback.xml</option>
<option>-Domero.logfile=${OMERO_LOGFILE}</option>
<option>-Domero.name=Blitz-${index}</option>
<target name="jmx">
<!-- Be sure to understand the consequences of enabling JMX.
It allows calling remote methods on your JVM -->
<option>-Dcom.sun.management.jmxremote</option>
<option>-Dcom.sun.management.jmxremote.port=${jmxport}</option>
<option>-Dcom.sun.management.jmxremote.authenticate=false</option>
<option>-Dcom.sun.management.jmxremote.ssl=false</option>
<option>-Djava.rmi.server.hostname=${jmxhost}</option>
</target>
<option>ome.services.blitz.Entry</option>
<env>CLASSPATH=${OMERO_JARS}*${SEP}${OMERO_ETC}${SEP}$${OMERO_PROFILE}${SEP}$${OMERO_PROFILE}*${SEP}%OMERO_PROFILE%${SEP}${SEP}%OMERO_PROFILE%*</env>
<adapter name="BlitzAdapter" replica-group="BlitzAdapters" endpoints="tcp"/>
<properties>
<properties refid="JavaServer"/>
<properties refid="Basics"/>
<properties refid="Blitz"/>
<properties refid="MultiThreaded"/>
<properties refid="Profile"/>
<property name="REPLACEMENT:blitz" value="REPLACEME"/>
</properties>
</server>
</server-template>
<server-template id="IndexerTemplate">
<parameter name="index"/>
<parameter name="config" default="default"/>
<server id="Indexer-${index}" exe="${JAVA}" activation="always" pwd="${OMERO_HOME}">
<option>MEMORY:indexer</option>
<option>-Djava.awt.headless=true</option>
<option>-Dlogback.configurationFile=${OMERO_ETC}logback-indexing.xml</option>
<option>-Domero.logfile=${OMERO_LOGFILE}</option>
<option>-Domero.name=Indexer-${index}</option>
<option>-jar</option>
<option>${OMERO_JARS}blitz.jar</option>
<option>ome.fulltext</option>
<adapter name="IndexerAdapter" endpoints="tcp"/>
<properties>
<properties refid="Basics"/>
<properties refid="JavaServer"/>
<properties refid="Blitz"/>
<properties refid="SingleThreaded"/>
<properties refid="Profile"/>
<!-- Silence these -->
<property name="REPLACEMENT:indexer" value="REPLACEME"/>
</properties>
</server>
</server-template>
<server-template id="PixelDataTemplate">
<parameter name="index"/>
<parameter name="dir"/>
<parameter name="config" default="default"/>
<server id="PixelData-${index}" exe="${JAVA}" activation="always" pwd="${OMERO_HOME}">
<option>MEMORY:pixeldata</option>
<option>-Djava.awt.headless=true</option>
<option>-Dlogback.configurationFile=${OMERO_ETC}logback-indexing.xml</option>
<option>-Domero.logfile=${OMERO_LOGFILE}</option>
<option>-Domero.name=PixelData-${index}</option>
<option>-jar</option>
<option>${OMERO_JARS}blitz.jar</option>
<option>ome.pixeldata</option>
<adapter name="PixelDataAdapter" endpoints="tcp"/>
<properties>
<properties refid="Basics"/>
<properties refid="JavaServer"/>
<properties refid="Blitz"/>
<properties refid="SingleThreaded"/>
<properties refid="Profile"/>
<property name="omero.repo.dir" value="${dir}"/>
<property name="REPLACEMENT:pixeldata" value="REPLACEME"/>
</properties>
</server>
</server-template>
<server-template id="RepositoryTemplate">
<parameter name="index"/>
<parameter name="dir"/>
<parameter name="config" default="default"/>
<server id="Repository-${index}" exe="${JAVA}" activation="always" pwd="${OMERO_HOME}">
<option>MEMORY:repository</option>
<option>-Djava.awt.headless=true</option>
<option>-Dlogback.configurationFile=${OMERO_ETC}logback.xml</option>
<option>-Domero.logfile=${OMERO_LOGFILE}</option>
<option>-Domero.name=Repository-${index}</option>
<option>-Domero.repo.dir=${dir}</option>
<option>-jar</option>
<option>${OMERO_JARS}blitz.jar</option>
<option>OMERO.repository</option>
<adapter name="RepositoryAdapter" endpoints="tcp">
<object identity="Repository-${index}" type="::omero::grid::InternalRepository"/>
</adapter>
<properties>
<properties refid="Basics"/>
<properties refid="JavaServer"/>
<properties refid="MultiThreaded"/>
<properties refid="Repository"/>
<properties refid="Profile"/>
<property name="REPLACEMENT:repository" value="REPLACEME"/>
</properties>
</server>
</server-template>
<!--
Python Servers
-->
<server-template id="ProcessorTemplate">
<parameter name="index"/>
<parameter name="dir"/>
<parameter name="exe" default="${PYTHON}"/>
<server id="Processor-${index}" exe="${exe}" activation="always" pwd="${OMERO_HOME}">
<option>${OMEROPY_HOME}runProcessor.py</option>
<env>${PYTHONPATH}</env>
<adapter name="ProcessorAdapter" endpoints="tcp">
<object identity="Processor-${index}" type="::omero::grid::Processor"/>
</adapter>
<properties>
<properties refid="Basics"/>
<properties refid="PythonServer"/>
<properties refid="CppServer"/>
<properties refid="MultiThreaded"/>
<properties refid="Repository"/>
<properties refid="Profile"/>
<property name="omero.repo.dir" value="${dir}"/>
</properties>
</server>
</server-template>
<server-template id="TablesTemplate">
<parameter name="index"/>
<parameter name="dir"/>
<parameter name="exe" default="${PYTHON}"/>
<server id="Tables-${index}" exe="${exe}" activation="always" pwd="${OMERO_HOME}">
<option>${OMEROPY_HOME}runTables.py</option>
<env>${PYTHONPATH}</env>
<adapter name="TablesAdapter" endpoints="tcp">
<object identity="Tables-${index}" type="::omero::grid::Tables"/>
</adapter>
<properties>
<properties refid="Basics"/>
<properties refid="PythonServer"/>
<properties refid="CppServer"/>
<properties refid="MultiThreaded"/>
<properties refid="Repository"/>
<properties refid="Profile"/>
<property name="omero.repo.dir" value="${dir}"/>
</properties>
</server>
</server-template>
<server-template id="FileServerTemplate">
<parameter name="exe" default="${PYTHON}"/>
<server id="FileServer" exe="${exe}" activation="always" pwd="${OMERO_HOME}">
<option>${OMEROPY_HOME}fsServerFS.py</option>
<env>${PYTHONPATH}</env>
<adapter name="omerofs.FileServer" endpoints="tcp">
<object identity="FileServer" type="::monitors::FileServer"/>
</adapter>
<properties>
<properties refid="Basics"/>
<properties refid="PythonServer"/>
<properties refid="CppServer"/>
<properties refid="MultiThreaded"/>
<properties refid="Profile"/>
<property name="omero.fs.fileServerIdString" value="FileServer"/>
<property name="omero.fs.fileServerAdapterName" value="omerofs.FileServer"/>
</properties>
</server>
</server-template>
<server-template id="MonitorServerTemplate">
<parameter name="exe" default="${PYTHON}"/>
<server id="MonitorServer" exe="${exe}" activation="always" pwd="${OMERO_HOME}">
<option>${OMEROPY_HOME}fsServerMS.py</option>
<env>${PYTHONPATH}</env>
<adapter name="omerofs.MonitorServer" endpoints="tcp">
<object identity="MonitorServer" type="::monitors::MonitorServer"/>
</adapter>
<properties>
<properties refid="Basics"/>
<properties refid="PythonServer"/>
<properties refid="CppServer"/>
<properties refid="MultiThreaded"/>
<properties refid="Profile"/>
<property name="omero.fs.monitorServerIdString" value="MonitorServer"/>
<property name="omero.fs.monitorServerAdapterName" value="omerofs.MonitorServer"/>
</properties>
</server>
</server-template>
<server-template id="DropBoxTemplate">
<parameter name="exe" default="${PYTHON}"/>
<server id="DropBox" exe="${exe}" activation="always" pwd="${OMERO_HOME}">
<option>${OMEROPY_HOME}fsDropBox.py</option>
<env>${PYTHONPATH}</env>
<adapter name="omerofs.DropBox" endpoints="tcp"/>
<properties>
<properties refid="Basics"/>
<properties refid="PythonServer"/>
<properties refid="CppServer"/>
<properties refid="MultiThreaded"/>
<properties refid="DropBox"/>
<properties refid="Profile"/>
<property name="omero.fs.serverIdString" value="MonitorServer"/>
<property name="omero.fs.clientIdString" value="DropBox"/>
<property name="omero.fs.clientAdapterName" value="omerofs.DropBox"/>
</properties>
</server>
</server-template>
<server-template id="TestDropBoxTemplate">
<parameter name="exe" default="${PYTHON}"/>
<server id="TestDropBox" exe="${exe}" activation="manual" pwd="${OMERO_HOME}">
<option>${OMEROPY_HOME}fsDropBox.py</option>
<env>${PYTHONPATH}</env>
<adapter name="omerofs.TestDropBox" endpoints="tcp"/>
<properties>
<properties refid="Basics"/>
<properties refid="PythonServer"/>
<properties refid="CppServer"/>
<properties refid="MultiThreaded"/>
<properties refid="DropBox"/>
<properties refid="Profile"/>
<property name="omero.fs.serverIdString" value="MonitorServer"/>
<property name="omero.fs.clientIdString" value="TestDropBox"/>
<property name="omero.fs.clientAdapterName" value="omerofs.TestDropBox"/>
<!-- By adding an omero.fstest.config property, the behavior of the
DropBox sever will change! -->
<property name="omero.fstest.config" value="${OMERO_ETC}testdropbox.config"/>
</properties>
</server>
</server-template>
<!--
Ice infrastructure servers
-->
<server-template id="IcePatch2Template">
<parameter name="instance-name" default="${application}.IcePatch2"/>
<parameter name="endpoints" default="tcp"/>
<parameter name="directory"/>
<server id="${instance-name}" exe="icepatch2server" application-distrib="false" activation="always">
<adapter name="IcePatch2" endpoints="${endpoints}">
<object identity="${instance-name}/server" type="::IcePatch2::FileServer"/>
</adapter>
<properties>
<properties refid="Profile"/>
<property name="IcePatch2.Admin.Endpoints" value="tcp -h @omero.master.host@"/>
<property name="IcePatch2.Admin.RegisterProcess" value="1"/>
<property name="IcePatch2.InstanceName" value="${instance-name}"/>
<property name="IcePatch2.Directory" value="${directory}"/>
</properties>
</server>
</server-template>
<server-template id="Glacier2Template">
<parameter name="instance-name" default="${application}.Glacier2"/>
<parameter name="client-endpoints"/>
<parameter name="server-endpoints"/>
<parameter name="session-timeout" default="600"/><!-- 10 min -->
<server id="${instance-name}" exe="glacier2router" activation="always">
<properties>
<properties refid="Basics"/>
<properties refid="CppServer"/>
<properties refid="Profile"/>
<property name="Ice.Plugin.IceSSL" value="IceSSL:createIceSSL"/>
<property name="IceSSL.ProtocolVersionMax" value="tls1_1"/><!-- mac bug -->
<property name="IceSSL.Ciphers" value="ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH"/>
<property name="IceSSL.VerifyPeer" value="0"/>
<property name="IceSSL.Protocols" value="tls1"/>
<property name="Glacier2.Client.Endpoints" value="${client-endpoints}"/>
<property name="Glacier2.Server.Endpoints" value="${server-endpoints}"/>
<property name="Glacier2.InstanceName" value="${instance-name}"/>
<property name="Glacier2.SessionTimeout" value="${session-timeout}"/>
<property name="Glacier2.PermissionsVerifier" value="BlitzVerifier@BlitzAdapters"/>
<property name="Glacier2.SessionManager" value="BlitzManager@BlitzAdapters"/>
<property name="Glacier2.Client.ForwardContext" value="1"/>
<property name="Glacier2.Filter.Category.Accept" value="ProcessCallback ProcessorCallback"/>
<target name="trace">
<property name="Glacier2.Client.Trace.Override" value="1"/>
<property name="Glacier2.Client.Trace.Reject" value="1"/>
<property name="Glacier2.Client.Trace.Request" value="1"/>
<property name="Glacier2.Server.Trace.Override" value="1"/>
<property name="Glacier2.Server.Trace.Request" value="1"/>
</target>
</properties>
</server>
</server-template>
<service-template id="StormTemplate">
<parameter name="instance-name" default="${application}.IceStorm"/>
<parameter name="topic-manager-endpoints" default="tcp"/>
<parameter name="publish-endpoints" default="tcp"/>
<parameter name="flush-timeout" default="1000"/>
<service name="${instance-name}" entry="IceStormService,@ICE_LIB_VERSION@:createIceStorm">
<dbenv name="${service}"/>
<adapter name="${service}.TopicManager" id="${instance-name}.TopicManager" endpoints="${topic-manager-endpoints}">
<object identity="${instance-name}/TopicManager" type="::IceStorm::TopicManager"/>
</adapter>
<adapter name="${service}.Publish" id="${instance-name}.Publish" endpoints="${publish-endpoints}"/>
<properties>
<properties refid="CppServer"/>
<properties refid="Profile"/>
<property name="${service}.InstanceName" value="${instance-name}"/>
<property name="${service}.Flush.Timeout" value="${flush-timeout}"/>
<target name="debug">
<property name="Ice.Trace.Network" value="1"/>
<property name="${service}.Trace.Subscriber" value="1"/>
<property name="${service}.Trace.Topic" value="1"/>
<property name="${service}.Trace.TopicManager" value="1"/>
</target>
</properties>
</service>
</service-template>
<server-template id="StormTemplate">
<parameter name="instance-name" default="${application}.IceStorm"/>
<parameter name="topic-manager-endpoints" default="tcp"/>
<parameter name="publish-endpoints" default="tcp"/>
<parameter name="flush-timeout" default="1000"/>
<icebox id="${instance-name}" exe="icebox" activation="always">
<env>DYLD_LIBRARY_PATH=lib:$DYLD_LIBRARY_PATH</env>
<env>LD_LIBRARY_PATH=lib:$LD_LIBRARY_PATH</env>
<service-instance template="StormTemplate"
instance-name="${instance-name}"
topic-manager-endpoints="${topic-manager-endpoints}"
publish-endpoints="${publish-endpoints}"
flush-timeout="${flush-timeout}"/>
<properties>
<properties refid="CppServer"/>
<properties refid="Profile"/>
<property name="IceBox.InheritProperties" value="1"/>
<property name="Ice.Override.ConnectTimeout" value="5000"/>
</properties>
</icebox>
</server-template>
<!--
Misc.
-->
<replica-group id="BlitzAdapters">
<load-balancing type="adaptive" load-sample="5" n-replicas="2"/>
<object identity="BlitzVerifier" type="::Glacier2::PermissionVerifier"/>
<object identity="BlitzManager" type="::Glacier2::SessionManager"/>
</replica-group>
</icegrid>