fix #12513: close import log earlier to set its size correctly

[mtbc]

Do some imports, look in the server's managed repository, and check that the import log file sizes on disk match those for the import logs in the database. Fixes http://trac.openmicroscopy.org.uk/ome/ticket/12513.

bin/omero hql "SELECT path||name, size FROM OriginalFile WHERE mimetype = 'application/omero-log-file'"

We do thus close the import log very slightly earlier, but it is still after the interesting stuff has all happened, and after one has destroyed the session it is rather harder to update the database.

--no-rebase

[joshmoore]

e.g.

2015-02-09 11:05:04,480 8000       [l.Client-1] INFO   ormats.importer.cli.LoggingImportMonitor - METADATA_PROCESSED Step: 4 of 5  Logfile: 74695
2015-02-09 11:05:04,505 8025       [l.Client-0] INFO   ormats.importer.cli.LoggingImportMonitor - OBJECTS_RETURNED Step: 5 of 5  Logfile: 74695
2015-02-09 11:05:04,678 8198       [l.Client-1] INFO   ormats.importer.cli.LoggingImportMonitor - IMPORT_DONE Imported file: /lifesci/groups/jrs/jamoore/pr3458.fake
Imported pixels:
40078
Other imported objects:
Fileset:17914
Image:42278
2015-02-09 11:05:04,678 8198       [l.Client-1] INFO      ome.formats.importer.cli.ErrorHandler - Number of errors: 0

==> Summary
1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:01.516
[jamoore@ome-c6100-3 ~]$ /opt/hudson/workspace/OMERO-5.1-merge-build/src/dist/bin/omero download 74695  pr3458.74695
[jamoore@ome-c6100-3 ~]$ ls -ltra pr3458.74695
-rw-r--r-- 1 jamoore lsd 12973 Feb  9 11:05 pr3458.74695
[jamoore@ome-c6100-3 ~]$ ls -ltra /repositories/OMERO-5.1-merge-deploy/ManagedRepository/user-1_8/2015-02/09/11-05-03.296.log
-rw-rw-r-- 1 hudson hudson 12973 Feb  9 11:05 /repositories/OMERO-5.1-merge-deploy/ManagedRepository/user-1_8/2015-02/09/11-05-03.296.log

👍

[joshmoore]

Sorry, missing from the above is:

[jamoore@ome-c6100-3 ~]$ /opt/hudson/workspace/OMERO-5.1-merge-build/src/dist/bin/omero hql "select o.size from OriginalFile o where o.id = 74695" -q
 # | Col1  
---+-------
 0 | 12973 
(1 row)

[mtbc]

Now we just have to figure out if/how to fix the old ones. 😃

[joshmoore]

I'd assume this goes along with the automatic compression, etc.

[mtbc]

Oh, yes, could well.