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int(request.REQUEST.get('index', 0) all in try/except. See #9918 #482

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merged 4 commits into from Jan 4, 2013

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will-moore
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Can't assume that request strings can be cast to int().

9918 bug is due to adding of 'index' request parameter to various edit actions of the right hand panel, to cater for Well editing (which actually edits image at specified index).

This, combined with c35bac9 causes the bug. The single commit on this branch effectively reverts c35bac9, wrapping int(index) in a try / except.

A more thorough fix will be to remove the 'index' logic from the right-hand panel where not needed.

Can't assume that request strings are castable to int().
@joshmoore
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Does anyone know if this is intended for 4.4.5?

@jburel
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jburel commented Nov 16, 2012

@joshmoore; I will not take the chance, so I will exclude it.

@will-moore
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Depends whether #9918 is a blocker (can't edit Tag name / description in web).
The commit "shouldn't" cause any problems, since it's only adding try/except statements, but still, if #9918 isn't a blocker then no need to risk it.

@joshmoore
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@will-more, Chris also had some questions about the strategy in general, so it'll need to be omitted for 4.4.5.

@will-moore
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@chris-allan You have some questions about the "strategy in general"? Can you summarise here, or do you want to discuss?

@chris-allan
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Given that we are now after 4.4.5 my position is that we should be a little more thorough with this fix. Specifically I'd like to see the removal of the unneeded parsing from load_data_by_tag() and the switch to a more specific and documented try block such as:

# the index of a field within a well, can be given to us as an empty string
try:
    index = int(request.REQUEST.get('index', 0))
except ValueError:
    index = 0

I admit to not knowing the consequences on the code if index < 0. Perhaps a method should be used to be more thorough and consistent about parsing and error checking this variable?

It does also seem needless to be attempting this parsing action when executing a view function that does not target a Plate or Well. Perhaps we should be doing it only where required? Furthermore, does an error condition when a Plate or Well is being targeted make more sense rather than blindly using index=0?

@will-moore
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Hmmm - OK, just need to think how to do this without some horribly long template if/else statements!

@joshmoore
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Just an idea: is there any way to extend request/REQUEST to add a method getIntOrDefault('index', 0) ? Failing that, something on self like getInt(request, 'index', 0).

Will Moore added 2 commits December 17, 2012 16:48
This is a further measure to prevent invalid ?index= urls to cause errors in parsing request.get('index')
@will-moore
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@joshmoore @chris-allan Can I get this back into a build now? (remove the 'needs-work' label)?

@jburel
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jburel commented Dec 18, 2012

@will-moore: done

index = int(request.REQUEST.get(name, default))
except:
index = 0
print "getIntOrDefault", name, default, index
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print should go.

// we may have well-index, if we are editing an image within a Well
var idx = "{{ index }}";
if (idx.length > 0) {
idx = "?index=" + idx;
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Is there any way that {{ index }} can contain something that won't be appropriately appendable to ?index=? That's the only thing I can think to check, but otherwise this is good to go.

@will-moore
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@joshmoore {{ index }} should only ever contain a valid integer. Even if you manually edited a url with ?index=invalid then this would be caught by the try except that was added above.

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All seems a bit more thorough now. Merging.

chris-allan added a commit that referenced this pull request Jan 4, 2013
int(request.REQUEST.get('index', 0) all in try/except. See #9918
@chris-allan chris-allan merged commit ff06cbb into ome:dev_4_4 Jan 4, 2013
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jun 24, 2023
Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  - PR 6350 sbesson 'Fix off-by-one bin assignment in histogram tests' (user: sbesson)
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482' (user: sbesson)
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute' (user: sbesson)
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (user: sbesson)
  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system' (user: sbesson)
  - PR 6319 dominikl 'Add integration test for joining session' (user: dominikl)
  - PR 6309 jburel 'add try block' (user: jburel)
  - PR 6301 jburel 'Use the copy' (user: jburel)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (user: joshmoore)
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  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (user: manics)
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Excluded PRs:
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  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
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Merged PRs:
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  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Fix off-by-one bin assignment in histogram tests'

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Repository: ome/openmicroscopy
Excluded PRs:
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  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
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Merged PRs:
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  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Fix off-by-one bin assignment in histogram tests'

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Excluded PRs:
  - PR 6350 sbesson 'Fix off-by-one bin assignment in histogram tests' (user: sbesson)
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482' (user: sbesson)
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute' (user: sbesson)
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  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system' (user: sbesson)
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  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (user: joshmoore)
  - PR 6212 jburel 'add test to import images' (user: jburel)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (user: manics)
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  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
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  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Fix off-by-one bin assignment in histogram tests'

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Excluded PRs:
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  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
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  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

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Excluded PRs:
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  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
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  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

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Excluded PRs:
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  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482' (user: sbesson)
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  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system' (user: sbesson)
  - PR 6319 dominikl 'Add integration test for joining session' (user: dominikl)
  - PR 6309 jburel 'add try block' (user: jburel)
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  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (user: joshmoore)
  - PR 6212 jburel 'add test to import images' (user: jburel)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (user: manics)
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Repository: ome/openmicroscopy
Excluded PRs:
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude)
  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
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  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

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Repository: ome/openmicroscopy
Excluded PRs:
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude)
  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
Already up-to-date.

Merged PRs:
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  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

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Excluded PRs:
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  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482' (user: sbesson)
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute' (user: sbesson)
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (user: sbesson)
  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system' (user: sbesson)
  - PR 6319 dominikl 'Add integration test for joining session' (user: dominikl)
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  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (user: joshmoore)
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  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (user: manics)
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Excluded PRs:
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  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
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Merged PRs:
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  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

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Excluded PRs:
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  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
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  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
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Merged PRs:
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  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

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  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482' (user: sbesson)
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute' (user: sbesson)
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  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system' (user: sbesson)
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  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (user: joshmoore)
  - PR 6212 jburel 'add test to import images' (user: jburel)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (user: manics)
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  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
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  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

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  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
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  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

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Excluded PRs:
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  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482' (user: sbesson)
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute' (user: sbesson)
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  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system' (user: sbesson)
  - PR 6319 dominikl 'Add integration test for joining session' (user: dominikl)
  - PR 6309 jburel 'add try block' (user: jburel)
  - PR 6301 jburel 'Use the copy' (user: jburel)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (user: joshmoore)
  - PR 6212 jburel 'add test to import images' (user: jburel)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (user: manics)
Already up-to-date.

Generated by OMERO-push#1439 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-push/1439/)
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 11, 2023
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 11, 2023
Repository: ome/openmicroscopy
Excluded PRs:
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude)
  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
Already up-to-date.

Merged PRs:
  - PR 6301 jburel 'Use the copy'
  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

Conflicting PRs (not included):
  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system'

Generated by OMERO-push#17 (https://snoopycrimecop-ci.openmicroscopy.org/jenkins/job/OMERO-push/17/)
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 11, 2023
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 11, 2023
Repository: ome/openmicroscopy
Excluded PRs:
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude)
  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
Already up-to-date.

Merged PRs:
  - PR 6301 jburel 'Use the copy'
  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

Conflicting PRs (not included):
  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system'

Generated by OMERO-push#224 (https://snoopycrimecop-ci.openmicroscopy.org/jenkins/job/OMERO-push/224/)
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 11, 2023
Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types' (user: sbesson)
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482' (user: sbesson)
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute' (user: sbesson)
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (user: sbesson)
  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system' (user: sbesson)
  - PR 6319 dominikl 'Add integration test for joining session' (user: dominikl)
  - PR 6309 jburel 'add try block' (user: jburel)
  - PR 6301 jburel 'Use the copy' (user: jburel)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (user: joshmoore)
  - PR 6212 jburel 'add test to import images' (user: jburel)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (user: manics)
Already up-to-date.

Generated by OMERO-push#1440 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-push/1440/)
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 12, 2023
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 12, 2023
Repository: ome/openmicroscopy
Excluded PRs:
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude)
  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
Already up-to-date.

Merged PRs:
  - PR 6301 jburel 'Use the copy'
  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

Conflicting PRs (not included):
  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system'

Generated by OMERO-push#18 (https://snoopycrimecop-ci.openmicroscopy.org/jenkins/job/OMERO-push/18/)
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 12, 2023
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 12, 2023
Repository: ome/openmicroscopy
Excluded PRs:
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (label: exclude)
  - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (exclude comment)
  - PR 6212 jburel 'add test to import images' (exclude comment)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
Already up-to-date.

Merged PRs:
  - PR 6301 jburel 'Use the copy'
  - PR 6309 jburel 'add try block'
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute'
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482'
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types'

Conflicting PRs (not included):
  - PR 6346 sbesson 'Remove no-op services.jar from being generated by the build system'

Generated by OMERO-push#225 (https://snoopycrimecop-ci.openmicroscopy.org/jenkins/job/OMERO-push/225/)
snoopycrimecop added a commit to snoopycrimecop/openmicroscopy that referenced this pull request Jul 12, 2023
Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  - PR 6350 sbesson 'Histogram tests: fix tests and cover more pixel types' (user: sbesson)
  - PR 6349 sbesson 'Map contributors to use canonical real names and email addresses ome#482' (user: sbesson)
  - PR 6348 sbesson 'logback.xml/logback-indexing.xml: add default scanPeriod of 1 minute' (user: sbesson)
  - PR 6347 sbesson 'Upgrade Ivy to 2.5.1' (user: sbesson)
  - PR 6319 dominikl 'Add integration test for joining session' (user: dominikl)
  - PR 6309 jburel 'add try block' (user: jburel)
  - PR 6301 jburel 'Use the copy' (user: jburel)
  - PR 6275 joshmoore 'Add OMERO5.4__1 for omero-model#71' (user: joshmoore)
  - PR 6212 jburel 'add test to import images' (user: jburel)
  - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (user: manics)
Already up-to-date.

Generated by OMERO-push#1441 (https://latest-ci.openmicroscopy.org/jenkins/job/OMERO-push/1441/)
jburel added a commit that referenced this pull request Jul 13, 2023
Map contributors to use canonical real names and email addresses #482
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4 participants