bayesianmice: A Bayesian model-based investigation of Candida albicans colonization in a preclinical mouse model.

The bayesianmice repository provides the complete underlying data and code for all the figures in the "Results" section in the manuscript:

Shankar, J. et al. Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract. Scientific Reports. 5, 8131; DOI:10.1038/srep08131 (2015). Available at: http://dx.doi.org/10.1038/srep08131

The main website, data and additional documentation is @ the main project website.

For model specifications, underlying theory as well as a comparative evaluation of BMA ensemble regression against other ensemble regression models, please review:

Shankar J, Szpakowski S et al. A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses. BMC Bioinformatics. 2015 Feb;16(1):31+. DOI:10.1186/s12859-015-0467-6. Available at: http://dx.doi.org/10.1186/s12859-015-0467-6.