Finish study

openpharma · Jun 1, 2024 · 5d5abbd · 5d5abbd
1 parent 9588793
commit 5d5abbd
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Showing 9 changed files with 5 additions and 4 deletions.
diff --git a/vignettes/sbc.Rmd b/vignettes/sbc.Rmd
@@ -37,7 +37,7 @@ From the results below, the SBC rank statistics are approximately uniformly dist
 
 # Setup
 
-We load code from the SBC checking study, and we use custom functions to read and plot rank statistics:
+To show the SBC checking results in this vignette, we first load code from the SBC checking study, and we use custom functions to read and plot rank statistics:
 
 ```{r}
 library(dplyr)
@@ -69,7 +69,7 @@ plot_ranks <- function(ranks) {
 }
 ```
 
-Each section below is its own SBC checking study based on a given modeling scenario.
+Each section below is its own SBC checking study based on a given modeling scenario. Each scenario shows results from 1000 independent simulations from the prior.
 
 # Subgroup scenario
 

diff --git a/vignettes/sbc/_targets.R b/vignettes/sbc/_targets.R
@@ -10,9 +10,10 @@ tar_option_set(
   workspace_on_error = TRUE,
   error = "null",
   controller = crew.cluster::crew_controller_sge(
-    workers = 250L,
-    sge_cores = 3L,
+    workers = 50L,
     seconds_idle = 120,
+    sge_cores = 3L,
+    sge_memory_gigabytes_required = 32,
     sge_log_output = "logs/",
     script_lines = file.path("module load R", getRversion())
   )

diff --git a/vignettes/sbc/results/autoregressive.fst b/vignettes/sbc/results/autoregressive.fst
diff --git a/vignettes/sbc/results/autoregressive_moving_average.fst b/vignettes/sbc/results/autoregressive_moving_average.fst
diff --git a/vignettes/sbc/results/compound_symmetry.fst b/vignettes/sbc/results/compound_symmetry.fst
diff --git a/vignettes/sbc/results/diagonal.fst b/vignettes/sbc/results/diagonal.fst
diff --git a/vignettes/sbc/results/moving_average.fst b/vignettes/sbc/results/moving_average.fst
diff --git a/vignettes/sbc/results/subgroup.fst b/vignettes/sbc/results/subgroup.fst
diff --git a/vignettes/sbc/results/unstructured.fst b/vignettes/sbc/results/unstructured.fst