sort packages.csv

this will allow us to more easily compare/diff the changes to package versions in future changes

add-pkg.sh

@@ -38,7 +38,7 @@ else
 fi
 
 docker tag "r-$NAME" "$IMAGE"
-docker run -v "$PWD:/out" "$IMAGE" -e 'write.csv(installed.packages()[, c("Package","Version")], row.names=FALSE, file="/out/packages.csv")'
+docker run "$IMAGE" -e 'write.csv(installed.packages()[, c("Package","Version")], row.names=FALSE, file="/dev/stdout")' 2>/dev/null | sort > packages.csv
 
 set +x
 echo "Run this to push:"

packages.csv

@@ -1,64 +1,17 @@
-"Package","Version"
-"BH","1.72.0-3"
-"Brobdingnag","1.2-6"
-"DBI","1.1.0"
-"DT","0.15"
-"Epi","2.46"
-"FNN","1.1.3"
-"Formula","1.2-3"
-"GGally","2.0.0"
-"Gmisc","2.0.1"
-"HDInterval","0.2.2"
-"Hmisc","4.4-1"
-"KMsurv","0.1-5"
-"KernSmooth","2.23-17"
-"MASS","7.3-52"
-"MatchIt","4.2.0"
-"Matrix","1.2-18"
-"MatrixModels","0.4-1"
-"ModelMetrics","1.2.2.2"
-"NHPoisson","3.3"
-"Publish","2020.12.23"
-"R.methodsS3","1.8.1"
-"R.oo","1.25.0"
-"R.utils","2.12.0"
-"R6","2.4.1"
-"RColorBrewer","1.1-2"
-"RConics","1.1.1"
-"RCurl","1.98-1.2"
-"ROI","1.0-0"
-"ROI.plugin.lpsolve","1.0-0"
-"RSpectra","0.16-1"
-"Rcpp","1.0.5"
-"RcppArmadillo","0.9.900.3.0"
-"RcppEigen","0.3.3.7.0"
-"RcppParallel","5.0.2"
-"RcppProgress","0.4.2"
-"RcppRoll","0.3.0"
-"RcppThread","2.1.3"
-"Rdpack","2.1.1"
-"SCCS","1.2"
-"SQUAREM","2020.5"
-"SparseM","1.78"
-"StanHeaders","2.21.0-6"
-"TH.data","1.1-0"
-"UpSetR","1.4.0"
-"V8","3.2.0"
-"VGAM","1.1-6"
-"WeightIt","0.13.1"
-"XML","3.99-0.6"
 "abind","1.4-5"
 "arrow","4.0.0.1"
 "ash","1.0-15"
 "askpass","1.1"
 "assertthat","0.2.1"
 "aweek","1.0.2"
 "backports","1.4.1"
+"base","4.0.2"
 "base64enc","0.1-3"
 "bayesm","3.1-4"
 "bayesplot","1.7.2"
 "bayestestR","0.8.2"
 "bdsmatrix","1.3-4"
+"BH","1.72.0-3"
 "binom","1.1-1"
 "bit","4.0.4"
 "bit64","4.0.5"
@@ -68,13 +21,14 @@
 "brglm2","0.7.1"
 "bridgesampling","1.0-0"
 "brms","2.13.5"
+"Brobdingnag","1.2-6"
 "broom","0.7.5"
 "broom.helpers","1.2.1"
-"caTools","1.18.2"
 "callr","3.4.3"
 "car","3.0-9"
 "carData","3.0-4"
 "caret","6.0-86"
+"caTools","1.18.2"
 "cellranger","1.1.0"
 "checkmate","2.0.0"
 "class","7.3-17"
@@ -90,6 +44,7 @@
 "colorspace","1.4-1"
 "colourpicker","1.0"
 "commonmark","1.7"
+"compiler","4.0.2"
 "conquer","1.0.2"
 "consort","1.0.1"
 "corpcor","1.6.9"
@@ -101,17 +56,20 @@
 "credentials","1.3.0"
 "crosstalk","1.1.0.1"
 "curl","4.3"
+"datasets","4.0.2"
 "data.table","1.13.0"
 "date","1.2-39"
+"DBI","1.1.0"
 "dbplyr","1.4.4"
-"deSolve","1.28"
 "desc","1.2.0"
+"deSolve","1.28"
 "detectseparation","0.2"
 "dfidx","0.0-4"
 "digest","0.6.25"
 "distributional","0.2.0"
 "doParallel","1.0.15"
 "dplyr","1.0.2"
+"DT","0.15"
 "dtplyr","1.0.1"
 "dtw","1.23-1"
 "dtwclust","5.5.10"
@@ -121,6 +79,7 @@
 "egg","0.4.5"
 "ellipsis","0.3.1"
 "enrichwith","0.3.1"
+"Epi","2.46"
 "estimatr","0.30.2"
 "etm","1.1.1"
 "evaluate","0.14"
@@ -135,13 +94,15 @@
 "finalfit","1.0.4"
 "flexclust","1.4-1"
 "flexsurv","1.1.1"
+"FNN","1.1.3"
 "fontBitstreamVera","0.1.1"
 "fontLiberation","0.1.0"
 "fontquiver","0.2.1"
 "forcats","0.5.0"
 "foreach","1.5.0"
 "foreign","0.8-80"
 "forestplot","1.10.1"
+"Formula","1.2-3"
 "fs","1.5.0"
 "furrr","0.1.0"
 "future","1.18.0"
@@ -152,6 +113,7 @@
 "getopt","1.20.3"
 "gets","0.29"
 "ggalluvial","0.12.3"
+"GGally","2.0.0"
 "ggdist","2.2.0"
 "ggfortify","0.4.15"
 "ggh4x","0.2.1"
@@ -167,17 +129,23 @@
 "glmnet","4.1-4"
 "globals","0.12.5"
 "glue","1.4.2"
+"Gmisc","2.0.1"
 "gnm","1.1-1"
 "gower","0.2.2"
+"graphics","4.0.2"
+"grDevices","4.0.2"
+"grid","4.0.2"
 "gridExtra","2.3"
 "gt","0.2.2"
 "gtable","0.3.0"
 "gtools","3.8.2"
 "gtsummary","1.3.7"
 "haven","2.3.1"
+"HDInterval","0.2.2"
 "hdrcde","3.3"
 "here","0.1"
 "highr","0.8"
+"Hmisc","4.4-1"
 "hms","0.5.3"
 "htmlTable","2.0.1"
 "htmltools","0.5.0"
@@ -199,7 +167,9 @@
 "jtools","2.1.2"
 "kableExtra","1.3.4"
 "kernlab","0.9-29"
+"KernSmooth","2.23-17"
 "km.ci","0.5-2"
+"KMsurv","0.1-5"
 "knitr","1.29"
 "ks","1.11.7"
 "labeling","0.3"
@@ -223,12 +193,17 @@
 "maptools","1.0-2"
 "markdown","1.1"
 "marqLevAlg","2.0.7"
+"MASS","7.3-52"
+"MatchIt","4.2.0"
 "mathjaxr","1.6-0"
+"Matrix","1.2-18"
+"MatrixModels","0.4-1"
 "matrixStats","0.56.0"
 "maxstat","0.7-25"
 "mclust","5.4.7"
 "metadat","1.2-0"
 "metafor","3.8-1"
+"methods","4.0.2"
 "mets","1.2.9"
 "mgcv","1.8-33"
 "mice","3.11.0"
@@ -238,6 +213,7 @@
 "mitools","2.4"
 "mlogit","1.1-1"
 "mnlogit","1.2.6"
+"ModelMetrics","1.2.2.2"
 "modelr","0.1.8"
 "modelsummary","0.6.6"
 "modeltools","0.2-23"
@@ -248,6 +224,7 @@
 "munsell","0.5.0"
 "mvtnorm","1.1-1"
 "naniar","0.6.0"
+"NHPoisson","3.3"
 "nleqslv","3.3.2"
 "nlme","3.1-149"
 "nloptr","1.2.2.2"
@@ -257,11 +234,12 @@
 "openssl","1.4.2"
 "openxlsx","4.1.5"
 "optparse","1.6.6"
-"pROC","1.16.2"
+"Package","Version"
 "packrat","0.5.0"
 "pacman","0.5.1"
 "pammtools","0.5.8"
 "pander","0.6.3"
+"parallel","4.0.2"
 "parameters","0.12.0"
 "parglm","0.1.6"
 "patchwork","1.1.1"
@@ -283,24 +261,38 @@
 "praise","1.0.0"
 "predtools","0.0.2"
 "prettyunits","1.1.1"
+"pROC","1.16.2"
 "processx","3.4.4"
 "prodlim","2019.11.13"
 "progress","1.2.2"
 "promises","1.1.1"
 "proxy","0.4-27"
 "ps","1.3.4"
 "pseudo","1.4.3"
+"Publish","2020.12.23"
 "purrr","0.3.4"
 "quadprog","1.5-8"
 "quantreg","5.61"
 "qvcalc","1.0.2"
+"R6","2.4.1"
 "rainbow","3.6"
 "randomForest","4.6-14"
 "randomForestExplainer","0.10.1"
 "randtoolbox","2.0.2"
 "ranger","0.13.1"
 "rappdirs","0.3.1"
 "rbibutils","2.0"
+"RColorBrewer","1.1-2"
+"RConics","1.1.1"
+"Rcpp","1.0.5"
+"RcppArmadillo","0.9.900.3.0"
+"RcppEigen","0.3.3.7.0"
+"RcppParallel","5.0.2"
+"RcppProgress","0.4.2"
+"RcppRoll","0.3.0"
+"RcppThread","2.1.3"
+"RCurl","1.98-1.2"
+"Rdpack","2.1.1"
 "readr","1.3.1"
 "readxl","1.3.1"
 "recipes","0.1.15"
@@ -319,19 +311,26 @@
 "riskRegression","2021.10.10"
 "rlang","0.4.10"
 "rmarkdown","2.3"
+"R.methodsS3","1.8.1"
 "rms","6.2-0"
 "rngWELL","0.10-7"
+"ROI","1.0-0"
+"ROI.plugin.lpsolve","1.0-0"
+"R.oo","1.25.0"
 "rpart","4.1-15"
 "rprojroot","1.3-2"
 "rsconnect","0.8.16"
+"RSpectra","0.16-1"
 "rstan","2.21.2"
 "rstantools","2.1.1"
 "rstatix","0.6.0"
 "rstudioapi","0.11"
+"R.utils","2.12.0"
 "rvest","0.3.6"
 "sandwich","2.5-1"
 "sass","0.3.0"
 "scales","1.1.1"
+"SCCS","1.2"
 "segmented","1.4-1"
 "selectr","0.4-2"
 "sf","0.9-5"
@@ -345,19 +344,27 @@
 "snakecase","0.11.0"
 "sourcetools","0.1.7"
 "sp","1.4-2"
+"SparseM","1.78"
 "splines2","0.4.1"
+"splines","4.0.2"
+"SQUAREM","2020.5"
+"StanHeaders","2.21.0-6"
 "statmod","1.4.34"
+"stats","4.0.2"
+"stats4","4.0.2"
 "stringi","1.4.6"
 "stringr","1.4.0"
-"survMisc","0.5.5"
 "survey","4.1-1"
 "survival","3.2-3"
 "survminer","0.4.8"
+"survMisc","0.5.5"
 "svglite","1.2.3.2"
 "sys","3.4"
 "systemfonts","0.3.2"
 "tables","0.9.6"
+"tcltk","4.0.2"
 "testthat","2.3.2"
+"TH.data","1.1-0"
 "threejs","0.3.3"
 "tibble","3.0.3"
 "tictoc","1.0"
@@ -367,36 +374,29 @@
 "timeDate","3043.102"
 "timereg","2.0.1"
 "tinytex","0.25"
+"tools","4.0.2"
 "tsModel","0.6"
 "units","0.6-7"
+"UpSetR","1.4.0"
 "usethis","2.0.1"
 "utf8","1.1.4"
+"utils","4.0.2"
+"V8","3.2.0"
 "vcd","1.4-9"
 "vctrs","0.3.4"
+"VGAM","1.1-6"
 "viridis","0.5.1"
 "viridisLite","0.3.0"
 "visdat","0.5.3"
 "webshot","0.5.2"
+"WeightIt","0.13.1"
 "whisker","0.4"
 "withr","2.4.1"
 "xfun","0.16"
 "xml2","1.3.2"
+"XML","3.99-0.6"
 "xtable","1.8-4"
 "xts","0.12-0"
 "yaml","2.2.1"
 "zip","2.1.1"
 "zoo","1.8-8"
-"base","4.0.2"
-"compiler","4.0.2"
-"datasets","4.0.2"
-"grDevices","4.0.2"
-"graphics","4.0.2"
-"grid","4.0.2"
-"methods","4.0.2"
-"parallel","4.0.2"
-"splines","4.0.2"
-"stats","4.0.2"
-"stats4","4.0.2"
-"tcltk","4.0.2"
-"tools","4.0.2"
-"utils","4.0.2"