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INSTALLATION.md

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Installation

These instructions will allow you to install the package and accompanying databases on Linux. Mac OS X computers operate similarly. For any other systems, or if you cannot install the databases, we recommend installing via docker.

Pre-requisites

Installation requires VariantValidator and VariantFormatter

Installing

Download the git repo

$ git clone https://github.com/openvar/rest_variantValidator
$ cd rest_variantValidator

Create a virtual environment - recommended

$ conda env create -f environment.yml
$ conda activate vvrest

See the VariantValidator installation documentation to install the databases and set up configurations. You will need to run the confuguration script if you have not installed this API previously. Contact admin if you are having any difficulties