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List of MHCs that still throw exceptions #8

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erakra opened this issue Mar 3, 2017 · 2 comments
Open

List of MHCs that still throw exceptions #8

erakra opened this issue Mar 3, 2017 · 2 comments

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@erakra
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erakra commented Mar 3, 2017

H2-Kb Y22F, M23I, E24S, D30N mutant
H2-d class I
H2-f class I
H2-b class I
H2-k class I
H2-r class I
H2-s class I
H2-z class I
H2-p class I
H2-q class I
H2-v class I
RT1-A
H2-Db Q70H mutant
H2-Db L114Q, F116Y, E119D mutant
H2-Kb E152A, R155Y, L156Y mutant
RT1-Aa
RT1-Ac
H2-Kb Y84A mutant
H2-Kb Y84C mutant
H2-Kb D77S, K89A mutant
RT1-Bl
H2-Kwm7
Caja-E
H2-Db H155A mutant
H2-Db Y159F mutant
H2-class I

@iskandr
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iskandr commented Jul 18, 2017

Would adding a set of mutation annotation to AlleleName be a satisfactory solution for the mutated allele?

As for underspecified sequences like "H2-class I' -- what kind of parsed format would you want? In this case all we know is the species (and a set of possible genes), I'm not sure how to represent a normalized form for a large set of possible alleles.

This was referenced Jul 18, 2017
@iskandr
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iskandr commented Jul 25, 2017

Related: #19

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