Merge 33e3984 into 43e4634

.travis.yml

@@ -11,15 +11,19 @@ git:
   # https://github.com/travis-ci/travis-ci/issues/4575
   depth: 10
 cache:
+  # Cache pip installed dependencies
   pip: true
   # cache directory used for Ensembl downloads of GTF and FASTA files
   # along with the indexed db of intervals and ID mappings and pickles
-  # of sequence dictionaries. Also, pip
-  # directories:
-  #  - $HOME/.cache/pyensembl/
+  # of sequence dictionaries.
+  ## ---
+  ## Commenting this out for now due to failure of upload of cached data
+  ## to Travis at the end of build, probably exceeding some storage limit?
+  ##  - $HOME/.cache/pyensembl/
 env:
   global:
-    # MHC_BUNDLE_PASS
+    # MHC_BUNDLE_PASS = encrypted value
+    # Won't be available for PRs from external contributors
     - secure: "B2bLOYhDD1mSH6nBmUVoyoVzO8CsZ/qeduoQ/gq1UqPXyBa5cj8x1hYeYEXMVGH04dq6p5FHKIZoZOOmgtKoemje5enSV8IL2lttASqNvzsiyvy6I4C3r5Ve2H9HMLneDxkarfVVVhG2ZJyO7Y/vGN8STZWX6N3FJfCJ1B5kV5Q="
     - CONDA_ENV="test-environment-$TRAVIS_PYTHON_VERSION"
 addons:
@@ -45,13 +49,15 @@ before_install:
   - conda update -q conda
   # Useful for debugging any issues with conda
   - conda info -a
-
-  # install MHC predictors
-  - git clone https://mhcbundle:$MHC_BUNDLE_PASS@github.com/openvax/netmhc-bundle.git
-  - export NETMHC_BUNDLE_HOME=$PWD/netmhc-bundle
-  - mkdir tmp
-  - export NETMHC_BUNDLE_TMPDIR=$PWD/tmp
-  - export PATH=$PATH:$NETMHC_BUNDLE_HOME/bin
+  # install non-public MHC predictors if running within OpenVax org
+  - |
+    if [ -n "$MHC_BUNDLE_PASS" ]; then
+      git clone https://mhcbundle:$MHC_BUNDLE_PASS@github.com/openvax/netmhc-bundle.git;
+      export NETMHC_BUNDLE_HOME=$PWD/netmhc-bundle;
+      mkdir tmp;
+      export NETMHC_BUNDLE_TMPDIR=$PWD/tmp;
+      export PATH=$PATH:$NETMHC_BUNDLE_HOME/bin;
+    fi
   - git clone https://github.com/openvax/openvax-integration-tests.git
 install:
   - >

pyensembl/__init__.py

@@ -41,7 +41,7 @@
 )
 from .transcript import Transcript
 
-__version__ = '1.7.0'
+__version__ = '1.7.1'
 
 __all__ = [
     "MemoryCache",