Fixing serialization of VaccinePeptide objects (and a WUSTL link that…

… just broke)
openvax · Feb 28, 2018 · ff8318a · ff8318a
1 parent 75783e5
commit ff8318a
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/vaxrank/__init__.py b/vaxrank/__init__.py
@@ -1 +1 @@
-__version__ = "0.7.9"
+__version__ = "0.7.10"
diff --git a/vaxrank/report.py b/vaxrank/report.py
@@ -257,7 +257,7 @@ def _query_wustl(self, predicted_effect, gene_name):
         Returns a link to the WUSTL page for this variant, if present.
         """
         amino_acids = predicted_effect.short_description
-        api_url = "http://docm.genome.wustl.edu/api/v1/variants.json?amino_acids=%s&genes=%s" % (
+        api_url = "http://www.docm.info/api/v1/variants.json?amino_acids=%s&genes=%s" % (
             amino_acids, gene_name.upper())
         logger.info("WUSTL link: %s", api_url)
 

diff --git a/vaxrank/vaccine_peptide.py b/vaxrank/vaccine_peptide.py
@@ -189,8 +189,8 @@ def combined_score(self):
         return self.expression_score * self.mutant_epitope_score
 
     def to_dict(self):
+        epitope_predictions = self.mutant_epitope_predictions + self.wildtype_epitope_predictions
         return {
             "mutant_protein_fragment": self.mutant_protein_fragment,
-            "mutant_epitope_predictions": self.mutant_epitope_predictions,
-            "wildtype_epitope_predictions": self.wildtype_epitope_predictions,
+            "epitope_predictions": epitope_predictions,
         }