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Using an environment variable to set where the reference peptide index lives. #162

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merged 3 commits into from
May 17, 2018

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julia326
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@julia326 julia326 requested a review from iskandr May 17, 2018 17:06
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Coverage Status

Coverage increased (+1.5%) to 87.427% when pulling 80cadc9 on change-fm-index-path into df7a6bf on master.

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coveralls commented May 17, 2018

Coverage Status

Coverage remained the same at 85.965% when pulling 900de14 on change-fm-index-path into df7a6bf on master.

.travis.yml Outdated
@@ -42,6 +42,8 @@ before_install:
- mkdir tmp
- export NETMHC_BUNDLE_TMPDIR=$PWD/tmp
- export PATH=$PATH:$NETMHC_BUNDLE_HOME/bin
# tells vaxrank where to install the reference peptide cache
- export REF_PEPTIDES_DIR=$HOME/.cache/vaxrank
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Can you prefix this something? Maybe VAXRANK_REF_PEPTIDES_DIR?

@julia326 julia326 merged commit 3915c5f into master May 17, 2018
@julia326 julia326 deleted the change-fm-index-path branch May 17, 2018 17:59
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3 participants