Wrong type argument: integer-or-marker-p, nil #2361

otech-nl · 2023-07-07T09:19:00Z

Description

I use org-roam on Linux and Windows, and recently added MacOS to the mix. The configuration that worked for me on other platforms now gives a "Wrong type argument: integer-or-marker-p, nil" when the org-roam db is updated.

Steps to Reproduce

The relevant part of my config (with straight use-package):

  (use-package org-roam
    :ensure t
    :init
    (setq org-roam-v2-ack t)
    :after org
)

The error occurs when I start Emacs, but I can also trigger it with org-roam-db-sync.

I also tried to remove the org-roam database and the complete straight folder before starting Emacs to force a clean start, but this gives the same result.

Backtrace

I don't get a backtrace, even with debug-on-error t (or --debug-init). Instead I get the following message for each of my org-roam files:

Error (org-roam): Failed to process <filename>.org with error Wrong type argument: integer-or-marker-p, nil, skipping... Disable showing Disable logging

This error messages comes from org-roam-db.el:698, which is confirmed because I see the message "Processing modified files..."

Expected Results

Updated database without errors

Actual Results

Error messages as described above.

The database does get filled with tables and data. I can't say if its complete.

Environment

Emacs installed with homebrew cask, which uses https://emacsformacosx.com/.

Emacs: GNU Emacs 28.2 (build 1, aarch64-apple-darwin21.1.0, NS appkit-2113.00 Version 12.0.1 (Build 21A559))
of 2023-02-22
Framework: N/A
Org: Org mode version 9.7-pre (release_9.6.7-543-g501be3 @ /Users/steets/.emacs.d/straight/build/org/)
Org-roam: v2.2.2-42-g5c06471
sqlite-connector: sqlite

The text was updated successfully, but these errors were encountered:

max6166 · 2023-07-08T21:52:21Z

+1. Exactly the same problem.

The only clue I've been able to find is that the probem seems to be related to links. Both of my probloematic files contain links. One has external links and the other org-roam links. Deleting the links solves the problem.

Emacs: GNU Emacs 28.2 (build 1, aarch64-apple-darwin21.1.0, NS appkit-2113.00 Version 12.0.1 (Build 21A559))
of 2023-02-22
Framework: N/A
Org: Org mode version 9.7-pre (release_N/A-N/A-2e2ed4 @ /Users/me/.emacs.d/elpa/org-9.7pre0.20230707.85843/)
Org-roam: 2.2.2- sqlite-connector: sqlite

  :ensure t
  :custom
  (org-roam-directory (file-truename "~/org/org-roam/"))
  :bind (("C-c n l" . org-roam-buffer-toggle)
          ("C-c n f" . org-roam-node-find)
          ("C-c n g" . org-roam-graph)
          ("C-c n i" . org-roam-node-insert)
          ("C-c n c" . org-roam-capture)
          ;; Dailies
          ("C-c n j" . org-roam-dailies-capture-today))
  :config
  (setq org-roam-node-display-template (concat "${title:*} " (propertize "${tags:10}" 'face 'org-tag)))
  (org-roam-db-autosync-mode)
  (require 'org-roam-protocol)
  )

otech-nl · 2023-07-09T12:32:37Z

I checked a subset of my notes that got successfully imported and can confirm they did not contain links.

vderyagin · 2023-07-11T13:51:49Z

Also had this, slightly downgrading org-mode (to commit 9082fa889) resolved the issue, didn't investigate further than that

max6166 · 2023-07-11T21:32:34Z

Below is a simple node example that triggers the error. There are no square brackets around the link info. This is the complete text of the node.

:PROPERTIES:
:ID:       C8AD00C6-A447-4BA4-B844-E48262019C1B
:END:
#+title: Test

id:D6765314-53B6-4D90-A0F7-889154A4C361

Removing the colon from the last line fixes the problem.

:PROPERTIES:
:ID:       C8AD00C6-A447-4BA4-B844-E48262019C1B
:END:
#+title: Test

idD6765314-53B6-4D90-A0F7-889154A4C361

otech-nl · 2023-07-12T17:38:26Z

Also had this, slightly downgrading org-mode (to commit 9082fa889) resolved the issue, didn't investigate further than that

Thanks! With straight.el I can pin my version in .emacs.d/straight/versions/default.el to org@9.5.5 with:

(("org" . "8ef6205a560cd3a92f8c5f8fe34953b80121c2cb"))
:gamma

This gets rid of the error for me.

If I understand correctly, straight installs the latest version by default (org@9.7-pre). The above suggests that this pre-release breaks org-roam. I am not sure if/how to inform the maintainers of org/org-roam. Any suggestions?

ifinkelstein · 2023-07-15T22:54:50Z

Quick note that M-x straight-freeze-versions should be run first to write the .emacs.d/straight/versions/default.el file. This will lock down all package versions, unless the file is edited to remove all but the org-related commit.

Also had this, slightly downgrading org-mode (to commit 9082fa889) resolved the issue, didn't investigate further than that

Thanks! With straight.el I can pin my version in .emacs.d/straight/versions/default.el to org@9.5.5 with:
(("org" . "8ef6205a560cd3a92f8c5f8fe34953b80121c2cb"))
:gamma
This gets rid of the error for me.

If I understand correctly, straight installs the latest version by default (org@9.7-pre). The above suggests that this pre-release breaks org-roam. I am not sure if/how to inform the maintainers of org/org-roam. Any suggestions?

Itrekr · 2023-07-23T14:10:05Z

I also have this issue. Any note with links fully messes up my emacs somehow.

jmburgos · 2023-07-24T09:38:28Z

+1 Same problem here. I am using:

Org roam: v2.2.2-42-g5c06471
Org mode version 9.7-pre (release_9.6.7-572-g39de4a)
GNU Emacs 30.0.50 (build 2, x86_64-pc-linux-gnu, GTK+ Version 3.24.37, cairo version 1.17.8) of 2023-05-09.

So if using the pre-release version of org mode is the problem, how do I exactly reverse to a previous version? I am using straight, but I my expertise is very thin. From what was described before, I need to:

Run straight-freeze-versions to generate the default.el file.
Edit the org entry in the file

... and then? I am not sure how to force straight to re-install org mode. Could you give me some points? Thanks! :)

Itrekr · 2023-07-24T09:51:56Z

+1 Same problem here. I am using:

Org roam: v2.2.2-42-g5c06471
Org mode version 9.7-pre (release_9.6.7-572-g39de4a)
GNU Emacs 30.0.50 (build 2, x86_64-pc-linux-gnu, GTK+ Version 3.24.37, cairo version 1.17.8) of 2023-05-09.

So if using the pre-release version of org mode is the problem, how do I exactly reverse to a previous version? I am using straight, but I my expertise is very thin. From what was described before, I need to:

Run straight-freeze-versions to generate the default.el file.

Edit the org entry in the file

... and then? I am not sure how to force straight to re-install org mode. Could you give me some points? Thanks! :)

I second this. If someone could explain how to get this done for the novices like me/us I'd be very grateful. My whole workflow is broken now so I'd love to fix it.

otech-nl · 2023-07-24T09:54:41Z

Check my previous reply for configuring straight.el.

jmburgos · 2023-07-24T10:19:16Z

@otech-nl, I was trying to follow your instructions. I ran straight-freeze-versions and edited the defaul.el file as you did. But I am not sure what to do after that. I did straight-pull org and straight-merge org, but my org mode version is still 9.7-pre. As I said, my expertise is thin... :)

An of course, this happens when I on a deadline and I need to use org-roam a lot. Murphy's law, I guess...

otech-nl · 2023-07-24T10:25:24Z

@otech-nl, I was trying to follow your instructions. I ran straight-freeze-versions and edited the defaul.el file as you did. But I am not sure what to do after that. I did straight-pull org and straight-merge org, but my org mode version is still 9.7-pre. As I said, my expertise is thin... :)

You may have to delete org from .emacs.d/straight/repos and/or .emacs.d/straight/build and restart Emacs

An of course, this happens when I on a deadline and I need to use org-roam a lot. Murphy's law, I guess...

More like Finagle's corollary ;)
Good luck!

draxil · 2023-07-24T10:40:53Z

Is there a bug report for this in org-mode?

jmburgos · 2023-07-24T10:47:57Z

Thank you @otech-nl, deleting org from those locations was the key, and in hindsight something obvious to do. Now I am in org 9.5.5. and everything works fine. Hopefully this will get sorted soon.

Itrekr · 2023-07-24T12:22:15Z

Check my previous reply for configuring straight.el.

I can't get straight.el to work. I have tried using straight-freeze-versions but this gives me a vague error that "Caches are still outdated; something is seriously wrong" but I can't find the cause of this. Am I missing some glaringly obvious step in the straight.el process?

goofansu · 2023-07-25T08:44:22Z

I confirm the latest stable version 9.6.7 also works. Configure in packages.el if using Doom Emacs:

(package! org :pin "5890ac")

dustinfarris · 2023-07-26T04:22:21Z

I confirm the latest stable version 9.6.7 also works. Configure in packages.el if using Doom Emacs:
(package! org :pin "5890ac")

Thanks for the tip, but where did you get that commit? I couldn't find it anywhere.

I pegged to 9.6.7 with:

(package! org :pin "ca873f7")

and things are working much smoother now :-)

goofansu · 2023-07-26T06:51:07Z

@dustinfarris In the link: https://git.savannah.gnu.org/cgit/emacs/org-mode.git/tag/?h=release_9.6.7

yantar92 · 2023-08-02T18:19:24Z

See my comment in radian-software/straight.el#1107 for the likely reason.
I believe that the issue belongs to straight.

yanboyang713 · 2023-08-06T12:53:55Z

Hello @dustinfarris ,

I pined to "ca873f7" and "5890ac", but still does not work.
Which version of emacs are you using? I am using 28.2.
Thanks

yantar92 · 2023-08-06T13:17:37Z

@yanboyang713 You may need to re-compile everything that depends on Org. Because the issue is related to inlined functions that may be left in mixed state if you switched back-and-forth between the pins.

yanboyang713 · 2023-08-06T15:36:44Z

Thanks @yantar92 . Working now.

goofansu · 2023-08-08T02:27:37Z

I pegged to 9.6.7 with:
(package! org :pin "ca873f7")

Hi @dustinfarris, where did you get the ca873f7 commit? I found 5890ac is not usable when doom upgrade.

dustinfarris · 2023-08-08T02:39:39Z

5890ac is the tag ref. The actual commit that was tagged is ca873f7 https://git.savannah.gnu.org/cgit/emacs/org-mode.git/commit/?h=release_9.6.7&id=ca873f7fe47546bca19821f1578a6ab95bf5351c

jmburgos · 2023-08-09T15:07:26Z

(HEAD -> master, origin/master, origin/HEAD) ff63b15 2023-06-15

progfolio · 2023-08-09T15:13:04Z

(HEAD -> master, origin/master, origin/HEAD) ff63b15 2023-06-15

You would need to update to straight's "develop" branch.
e.g.

(setq straight-repository-branch "develop")

Before straight's bootstrapping snippet.

jmburgos · 2023-08-09T15:58:57Z

Ah! You are right @progfolio. Now things are working!

gicrisf · 2023-08-14T15:13:36Z

Quick step-by-step instructions for Doom emacs users:

Close your Emacs;
Delete the ~/.config/emacs/.local/ directory;
Open ~/.config/emacs/modules/lang/org/packages.el;
The first expression is package! org... and we want to rollback that.

To rollback org, look at the last line of package! org expression...

(package! org
  :recipe (:host github
          ...)
  :pin "5890ac") ;; <--- Edit this line with the right commit. This one works on my machine.

... and save the file.

No, you can run ~/.config/emacs/bin/doom install.
Wait for Doom to install every package again. During the installation, you should see this line:

 - Checked out org: 5890ac

Finally, start your Emacs and enjoy your org-roam while waiting for further updates.

Samoed · 2023-08-14T18:02:46Z

@gicrisf You can pin org-mode version in doom/packages.el. And after that delete org repos and then doom sync.

gicrisf · 2023-08-15T10:03:21Z

@Samoed Does it work too?! This is great, I thought the modules would be loaded first

Enemoy · 2023-08-16T11:53:32Z

I pinned it according to @gicrisf but I still have the same error in files that contain links. The error messages start to stack up. I can still use org mode but every time I update my config I have the same error and the links in documents don't work.
Do I have to pin the version in packages.el or where do I have to pin it? And which version of the package should I pin?

I am new to the whole (doom) emacs thing and I am really confused, sorry.

I get these error messages:

⛔ Warning (emacs): Org version mismatch.  Org loading aborted.
This warning usually appears when a built-in Org version is loaded
prior to the more recent Org version.

Version mismatch is commonly encountered in the following situations:

1. Emacs is loaded using literate Org config and more recent Org
   version is loaded inside the file loaded by ‘org-babel-load-file’.
   ‘org-babel-load-file’ triggers the built-in Org version clashing
   the newer Org version attempt to be loaded later.

   It is recommended to move the Org loading code before the
   ‘org-babel-load-file’ call.

2. New Org version is loaded manually by setting ‘load-path’, but some
   other package depending on Org is loaded before the ‘load-path’ is
   configured.
   This "other package" is triggering built-in Org version, again
   causing the version mismatch.

   It is recommended to set ‘load-path’ as early in the config as
   possible.

3. New Org version is loaded using straight.el package manager and
   other package depending on Org is loaded before straight triggers
   loading of the newer Org version.

   It is recommended to put

    (straight-use-package 'org)

   early in the config.  Ideally, right after the straight.el
   bootstrap.  Moving ‘use-package’ :straight declaration may not be
   sufficient if the corresponding ‘use-package’ statement is
   deferring the loading.
⛔ Error (org-roam): Failed to process <file> with error Wrong type argument: integer-or-marker-p, nil, skipping...
⛔ Error (org-roam): Failed to process<file> with error Wrong type argument: integer-or-marker-p, nil, skipping...

It does say config successfully reloaded! though.
I have neither babel nor straight (consciously) installed and there is no load-path anywhere in my config.

jacmoe · 2023-08-16T13:01:43Z

@Enemoy :

Since you are using Doom Emacs, you are using straight and other supporting packages . . .

Pin Org in packages.el ->

;; Fix for org-roam link issue
(package! org :pin "ca873f7")

Then remove the .local directory in the main Doom dir.

Then simply run doom sync - since you removed the local dir, Doom should automatically download and install all the packages.

It should all complete without errors.

Now, you can safely and successfully perform doom upgrade

Fuco1/smartparens@7afd64739501 -> Fuco1/smartparens@79a338db115f Wilfred/helpful@94c25337b2de -> Wilfred/helpful@c57ff0d284b5 bbatsov/projectile@e18ad4d6111e -> bbatsov/projectile@971cd5c4f25f domtronn/all-the-icons.el@51bf77da1ebc -> domtronn/all-the-icons.el@f491f39c2133 emacs-compat/compat@be1d94d5e0e2 -> emacs-compat/compat@75d0b8527f51 emacs-straight/project@e086bdc7c515 -> emacs-straight/project@6c41ad68edf1 joddie/pcre2el@38c6f80c787d -> joddie/pcre2el@b941ed8a9629 jscheid/dtrt-indent@d4fd1b4977eb -> jscheid/dtrt-indent@be07f4979a5b justbur/emacs-which-key@809364403285 -> justbur/emacs-which-key@df6b0cb84498 noctuid/general.el@9651024e7f40 -> noctuid/general.el@833dea2c4a60 radian-software/straight.el@56a8b6c8a46f -> radian-software/straight.el@5e84c4e2cd8c Close: #7343 Fix: #7326 Ref: radian-software/straight.el#1107 Ref: org-roam/org-roam#2361 Co-authored-by: Samoed <Samoed@users.noreply.github.com>

64J0 · 2023-09-10T22:25:12Z

+1 facing this problem as well.

This workaround solved the problem in my case: #2361 (comment).

As mentioned in the comment (using an external link), after pinning the version we need to run M-x straight-thaw-versions.

AlecVercruysse · 2023-09-11T02:01:16Z

@progfolio Thank you for looking into this, moving to the development branch of straight.el fixes this problem for me.

Fuco1/smartparens@7afd64739501 -> Fuco1/smartparens@79a338db115f Wilfred/helpful@94c25337b2de -> Wilfred/helpful@c57ff0d284b5 bbatsov/projectile@e18ad4d6111e -> bbatsov/projectile@971cd5c4f25f domtronn/all-the-icons.el@51bf77da1ebc -> domtronn/all-the-icons.el@f491f39c2133 emacs-compat/compat@be1d94d5e0e2 -> emacs-compat/compat@75d0b8527f51 emacs-straight/project@e086bdc7c515 -> emacs-straight/project@6c41ad68edf1 joddie/pcre2el@38c6f80c787d -> joddie/pcre2el@b941ed8a9629 jscheid/dtrt-indent@d4fd1b4977eb -> jscheid/dtrt-indent@be07f4979a5b justbur/emacs-which-key@809364403285 -> justbur/emacs-which-key@df6b0cb84498 noctuid/general.el@9651024e7f40 -> noctuid/general.el@833dea2c4a60 radian-software/straight.el@56a8b6c8a46f -> radian-software/straight.el@5e84c4e2cd8c Close: doomemacs#7343 Fix: doomemacs#7326 Ref: radian-software/straight.el#1107 Ref: org-roam/org-roam#2361 Co-authored-by: Samoed <Samoed@users.noreply.github.com>

zot · 2023-12-13T14:21:59Z

For anyone using elpaca, this use-package clause works for me (maybe there's a better one, beats me):

(use-package org
  ;; pin org at 9.6 for now
  ;; modified from elpaca/cache/gnu-elpa.eld to use the release_9.6 branch
  :elpaca (:package "org" :repo "git://git.sv.gnu.org/emacs/elpa" :local-repo "org" :branch "release_9.6" :files ("*" (:exclude ".git" "etc/schema" "contrib" "mk" "testing" "lisp/org-install.el"))))

progfolio · 2023-12-14T17:52:00Z

For anyone using elpaca, this use-package clause works for me (maybe there's a better one, beats me):

(use-package org
  ;; pin org at 9.6 for now
  ;; modified from elpaca/cache/gnu-elpa.eld to use the release_9.6 branch
  :elpaca (:package "org" :repo "git://git.sv.gnu.org/emacs/elpa" :local-repo "org" :branch "release_9.6" :files ("*" (:exclude ".git" "etc/schema" "contrib" "mk" "testing" "lisp/org-install.el"))))

Shouldn't need the workaround if you are using Elpaca. See the test case below:

Test Case

How to run this test?

(elpaca-test
  :early-init (setq elpaca-menu-functions '(elpaca-menu-org elpaca-menu-melpa))
  :init (elpaca (compat :files ("*" (:exclude ".git")) :local-repo "compat" :repo
                        "https://github.com/emacs-compat/compat"))
  (elpaca org)
  (elpaca org-roam
    (setq org-roam-directory "/tmp/test/" org-roam-v2-ack t))
  (elpaca-wait)
  (org-roam-db-sync))

Host Env

elpaca	1008684 HEAD -> feat/version-checks
isntaller	0.6
emacs	GNU Emacs 30.0.50 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.38, cairo version 1.18.0) of 2023-12-06
git	git version 2.43.0

Output

  INFO     Scraping files for loaddefs... 
  INFO     Scraping files for loaddefs...done
  GEN      ../elpaca-autoloads.el
Cloning into '/tmp/elpaca.wsMEx5/elpaca/repos/elpaca'...
Your branch is up to date with 'origin/master'.
Checking /tmp/elpaca.wsMEx5/elpaca/repos/elpaca...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-info.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-log.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-manager.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-menu-elpa.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-menu-melpa.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-menu-org.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-process.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-test.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca-ui.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/elpaca.el...
Checking /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/doc...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/doc/early-init.el...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/doc/init.el...
Checking /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/extensions...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/extensions/elpaca-use-package.el...
Checking /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/images...
Checking /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/test...
Compiling /tmp/elpaca.wsMEx5/elpaca/repos/elpaca/test/elpaca-test.el...
Done (Total of 11 files compiled, 3 skipped in 4 directories)

Downloading MELPA recipes...
Downloading MELPA recipes...100%
Clearing removed files... 
Clearing removed files...done
Processing modified files... 
Processing modified files...4% 
Unable to read file "/home/n/git/Emacs/org-html-themes/setup/theme-readtheorg.setup"
Unable to read file "/home/n/git/Emacs/org-html-themes/setup/theme-readtheorg.setup"
Unable to read file "/home/n/git/Emacs/org-html-themes/setup/theme-readtheorg.setup"
Unable to read file "/home/n/git/Emacs/org-html-themes/setup/theme-readtheorg.setup"
Processing modified files...11% 
Processing modified files...12% 
Processing modified files...13% 
Processing modified files...17% 
Processing modified files...24% 
Processing modified files...31% 
Processing modified files...32% 
Processing modified files...37% 
Processing modified files...44% 
Processing modified files...45% 
Processing modified files...46% 
Processing modified files...47% 
Processing modified files...48% 
Processing modified files...49% 
Processing modified files...50% 
Processing modified files...51% 
Processing modified files...52% 
Processing modified files...53% 
Processing modified files...54% 
Processing modified files...61% 
Processing modified files...77% 
Processing modified files...90% 
Processing modified files...91% 
Processing modified files...92% 
Processing modified files...93% 
Processing modified files...94% 
Processing modified files...99% 
Processing modified files...done

 Test Env

Elpaca ad60abc HEAD -> master, origin/master, origin/HEAD
installer:      0.6
emacs-version:  GNU Emacs 30.0.50 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.38, cairo version 1.18.0)
 of 2023-12-06
git --version:  git version 2.43.0

zot · 2023-12-14T17:55:39Z

Huh, well it was loading 0rg 9.7.X and breaking org-roam until I fixed it with that just a few days ago. So at least one person had the problem (me).

progfolio · 2023-12-14T18:00:27Z

Huh, well it was loading 0rg 9.7.X and breaking org-roam until I fixed it with that just a few days ago. So at least one person had the problem (me).

Here's another test, explicitly listing the version of Org (9.7-pre):

Test Case

How to run this test?

(elpaca-test
  :early-init (setq elpaca-menu-functions '(elpaca-menu-org elpaca-menu-melpa))
  :init (elpaca (compat :files ("*" (:exclude ".git")) :local-repo "compat" :repo
                        "https://github.com/emacs-compat/compat"))
  (elpaca org)
  (elpaca org-roam
    (setq org-roam-directory "/tmp/test/" org-roam-v2-ack t))
  (elpaca-wait)
  (org-roam-db-sync)
  (org-version nil 'full 'message))

Host Env

elpaca	1008684 HEAD -> feat/version-checks
isntaller	0.6
emacs	GNU Emacs 30.0.50 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.38, cairo version 1.18.0) of 2023-12-06
git	git version 2.43.0

Output

  INFO     Scraping files for loaddefs... 
  INFO     Scraping files for loaddefs...done
  GEN      ../elpaca-autoloads.el
Cloning into '/tmp/elpaca.KZ2kgv/elpaca/repos/elpaca'...
Your branch is up to date with 'origin/master'.
Checking /tmp/elpaca.KZ2kgv/elpaca/repos/elpaca...
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Compiling /tmp/elpaca.KZ2kgv/elpaca/repos/elpaca/test/elpaca-test.el...
Done (Total of 11 files compiled, 3 skipped in 4 directories)

Downloading MELPA recipes...
Downloading MELPA recipes...100%
Clearing removed files... 
Clearing removed files...done
Processing modified files... 
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Unable to read file "/home/n/git/Emacs/org-html-themes/setup/theme-readtheorg.setup"
Unable to read file "/home/n/git/Emacs/org-html-themes/setup/theme-readtheorg.setup"
Unable to read file "/home/n/git/Emacs/org-html-themes/setup/theme-readtheorg.setup"
Unable to read file "/home/n/git/Emacs/org-html-themes/setup/theme-readtheorg.setup"
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Processing modified files...done
Org mode version 9.7-pre (9.7-pre-n/a-gb8d27b
 @ /tmp/elpaca.KZ2kgv/elpaca/builds/org/)

 Test Env

Elpaca ad60abc HEAD -> master, origin/master, origin/HEAD
installer:      0.6
emacs-version:  GNU Emacs 30.0.50 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.38, cairo version 1.18.0)
 of 2023-12-06
git --version:  git version 2.43.0

Do you recall what steps you took to see the error?
Were packages updated and then the error started happening, fresh install, etc?

see org-roam/org-roam#2361

Wrong type argument: integer-or-marker-p, nil org-roam/org-roam#2361

kentbull · 2024-01-30T22:23:53Z

Straight package manage user here.

Pinning to "ca873f7" worked for me with the following config:

(use-package org-roam
  :straight (org-roam :type git :host github :repo "org-roam/org-roam" :commit "ca873f7")
  :init
  (setq org-roam-v2-ack t)
  :after org
  :custom
  (org-roam-directory "~/org/roam-brain")
  (org-roam-completion-everywhere t)
  :bind (("C-c n l" . org-roam-buffer-toggle)
         ("C-c n f" . org-roam-node-find)
         ("C-c n i" . org-roam-node-insert)
         :map org-mode-map
         ("C-M-i" . completion-at-point))
  :config
  (org-roam-setup))

Once you pin the version then you need to restart Emacs.

progfolio · 2024-01-30T22:31:05Z

Kent Bull notifications@github.com writes:

:straight (org-roam :type git :host github :repo "org-roam/org-roam" :commit "ca873f7")
Once you pin the version then you need to restart Emacs.

FYI, straight.el has no :commit recipe keyword.

From the README:

We support :branch, but not :commit or :version-regexp. To lock a
package to a specific commit, use a lockfile. See also #246 for
discussion of extensions to the recipe to support package pinning, which
is a planned feature.

You'll want to use a lockfile.

For Elpaca users, lockfiles are a planned feature.
However, Elpaca does have more flexible recipe keywords such as :ref and :pin.

kentbull · 2024-01-30T23:33:06Z

Ok, thanks for the correction. You're right. This means I don't know why it works for me.

lum7na · 2024-04-10T08:27:15Z

I've identified a temporary fix if you're using Org 9.7.

org-roam/org-roam-db.el

Line 572 in 8667e44

(goto-char (org-element-property :begin link))

Due to modifications in the Org Element API, the begin property was removed, leading to the aforementioned error. Replacing (org-element-property :begin link)) with (aref (org-element-property :standard-properties link) 0) can resolve this issue.

yantar92 · 2024-04-10T08:36:07Z

lum7na ***@***.***> writes:

I've identified a temporary fix if you're using Org 9.7. https://github.com/org-roam/org-roam/blob/8667e441876cd2583fbf7282a65796ea149f0e5f/org-roam-db.el#L572 Due to modifications in the Org Element API, the `begin` property was removed, leading to the aforementioned error.

This is not true. :begin property is still there, but the implementation details of the org-element object structure have changed.

Replacing `(org-element-property :begin link))` with `(aref (org-element-property :standard-properties link) 0)` can resolve this issue.

I advice against using this implementation detail. (org-element-property :begin link)) still works. But you may have to make sure that the inlined functions are re-compiled. After upgrading Org mode, all the users (including org-roam) of Org element API must be re-compiled.

…

-- Ihor Radchenko // yantar92, Org mode contributor, Learn more about Org mode at <https://orgmode.org/>. Support Org development at <https://liberapay.com/org-mode>, or support my work at <https://liberapay.com/yantar92>

ifinkelstein mentioned this issue Jul 23, 2023

How can we use the build-in version org Lambda-Emacs/lambda-emacs#28

Closed

JakDar mentioned this issue Jul 26, 2023

Notes with a link cannot be found by org-roam-node-find #2369

Closed

Delapouite mentioned this issue Aug 1, 2023

org-roam-node-insert error: wrong-type-argument integer-or-marker-p nil doomemacs/doomemacs#7326

Closed

4 tasks

maxi-k added a commit to maxi-k/.dotfiles that referenced this issue Aug 2, 2023

Pin org to fix roam-db-sync issue (org-roam/org-roam#2361)

e74ec00

danielkrajnik mentioned this issue Aug 2, 2023

Upgrading org-mode to 9.7 may break Org's dependents radian-software/straight.el#1107

Closed

yantar92 mentioned this issue Aug 2, 2023

Org 9.7 org-element API incompatible changes alphapapa/org-ql#364

Closed

io12 mentioned this issue Aug 14, 2023

org-fragtog--post-cmd: wrong-type-argument on Emacs 29 io12/org-fragtog#47

Closed

dangom mentioned this issue Aug 17, 2023

no org-babel-execute-function after upgrade emacs-jupyter/jupyter#489

Open

sternj mentioned this issue Aug 17, 2023

Jupyter fails to function after upgrade doomemacs/doomemacs#7354

Open

4 tasks

publicimageltd mentioned this issue Aug 18, 2023

integer-or-marker-p, nil, skipping after system update #2381

Open

cbkerr mentioned this issue Aug 24, 2023

Wrong type argument: integer-or-marker-p when parsing a file with links #2384

Open

nmoseman mentioned this issue Nov 13, 2023

Possible incompatibility between org-journal and org mode versions doomemacs/doomemacs#7545

Closed

4 tasks

omarjamil pushed a commit to omarjamil/dotfiles that referenced this issue Dec 24, 2023

Added org and org-roam. Org might need pinning to a previous versions

506555f

see org-roam/org-roam#2361

nikital added a commit to nikital/dotfiles that referenced this issue Jan 14, 2024

emacs: Roll back org to 9.6.17, breaks org-roam

40aba3c

Wrong type argument: integer-or-marker-p, nil org-roam/org-roam#2361

RecentlyRezzed mentioned this issue Jan 30, 2024

Maintenance Status? #2375

Open

Wrong type argument: integer-or-marker-p, nil #2361

Wrong type argument: integer-or-marker-p, nil #2361

Comments

otech-nl commented Jul 7, 2023

Description

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max6166 commented Jul 8, 2023 • edited

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max6166 commented Jul 8, 2023 •

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edited